1YXO

Crystal Structure of pyridoxal phosphate biosynthetic protein PdxA PA0593


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1YXO

Classification: OXIDOREDUCTASE

Total Structure Weight: 71004.62

Macromolecule Entities
Molecule Chains Length Organism Details
4-hydroxythreonine-4-phosphate dehydrogenase 1 A, B 328 Pseudomonas aeruginosa EC#: 1.1.1.262 IUBMB
Gene Name(s): pdxA1 PA0593
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EOH
Query on EOH

A, B ETHANOL
C2 H6 O
LFQSCWFLJHTTHZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.198
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 54.26 α = 90.00
b = 59.31 β = 90.00
c = 199.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-22
  • Released Date: 2005-04-05
  • Deposition author(s): Liu, Y., Xu, X., Dong, A., Kudritskam, M., Savchenko, A., Pai, E.F., Joachimiak, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2005-04-05

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2011-10-05

    Type: Structure summary