1YVU

Crystal structure of A. aeolicus Argonaute


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1YVU

Classification: RNA BINDING PROTEIN GENE REGULATION

Total Structure Weight: 83585.83

Macromolecule Entities
Molecule Chains Length Organism Details
hypothetical protein aq_1447 A 706 Aquifex aeolicus Mutation: M214M, M278M, M450M, M665M, M689M, M703M
Gene Name(s): aq_1447
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.208
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 64.15 α = 90.00
b = 100.68 β = 90.00
c = 115.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-16
  • Released Date: 2005-08-09
  • Deposition author(s): Yuan, Y.R., Pei, Y., Ma, J.B., Kuryavyi, V., Zhadina, M., Meister, G., Chen, H.Y., Dauter, Z., Tuschl, T., Patel, D.J.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Source and taxonomy, Version format compliance