RCSB Protein Data Bank - RCSB PDB - 1YM2 Structure Summary

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Crystal structure of human beta secretase complexed with NVP-AUR200

DOI:10.2210/pdb1ym2/pdb

1YM2

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Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

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Classification:	Hydrolase/hydrolase Inhibitor
Structure Weight:	136337.24

Molecule:

Beta-secretase 1

Polymer:

Type:

protein

Length:

402

Chains:

A, B, C

EC#:

Fragment:

UNP residues 48-447

Organism

Homo sapiens

Gene Names

BACE1 BACE KIAA1149

UniProtKB:

| | P56817

Molecule:

NVP-AUR200 INHIBITOR

Polymer:

Type:

protein

Length:

Chains:

X, Y, Z

Source

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Polymer: 1

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Escherichia coli

Polymer: 2

Scientific Name:

Synthetic construct

Taxonomy

Related PDB Entries Hide

Identifier Details

1YM4 beta-secretase complexed with NVP-AMK640

Biologically Interesting Molecules (BIRD)

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Identifier	Image	Name	Type	Class	Chain ID
PRD_000291 Search		BETA-SECRETASE INHIBITOR NVP-AUR200	Peptide-like	Inhibitor	X,Y,Z	Ligand Explorer

Modified Residues

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Identifier	Formula	Parent	Type
ACE Search	C₂ H₄ O		nonPolymer
24O Search	C₁₂ H₂₁ N O₄
LYT Search	C₄ H₁₁ N		nonPolymer

External Domain Annotations Hide
SCOP Classification v1.75: 3 Domains - data from SCOP

CATH Classification v3.4.0: 6 Domains - data from CATH

Pfam Classification: 1 Domain - data from Pfam
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

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Biological Assembly 1

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Biological assembly 1 assigned by authors and generated by PISA (software)

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Deposition Summary

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Authors: Hanessian, S., Yun, H., Hou, Y., Yang, G., Bayrakdarian, M., Therrien, E., Moitessier, N., Roggo, S., Veenstra, S.

Deposition:	2005-01-20
Release:	2006-01-17
Last Modified (REVDAT):	2011-07-13

Revision History Hide

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2012-12-12
Other

2011-07-13
Linkage

2011-07-13
Sequence database correspondence

2011-07-13
Polymer description

2011-07-13
Version format compliance

2011-07-13
Atom nomenclature

2011-07-13
Binding sites and description

2011-07-13
Non-polymer description

2011-07-13
Function and keywords

Experimental Details

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Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS

Unit Cell:
	Length [Å]	Angles [°]
	a = 82.26	α = 90.00
	b = 103.26	β = 104.12
	c = 100.62	γ = 90.00

Molecule of the Month Hide
beta-Secretase

Amyloid-beta Precursor Protein