1YIS

Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase

Structural Biology Knowledgebase: 1YIS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.174

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1YIS

Classification: LYASE

Total Structure Weight: 54296.86

Macromolecule Entities
Molecule Chains Length Organism Details
adenylosuccinate lyase A 478 Caenorhabditis elegans EC#: 4.3.2.2 IUBMB
Mutation: M1M, M61M, M85M, M177M, M189M, M288M, M295M, M335M, M382M, M383M, M384M, M421M
Gene Name(s): adsl-1 R06C7.5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.174
  • Space Group: I 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 124.24 α = 90.00
b = 124.24 β = 90.00
c = 165.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-01-12
  • Released Date: 2005-01-25
  • Deposition author(s): Symersky, J., Schormann, N., Lu, S., Zhang, Y., Karpova, E., Qiu, S., Huang, W., Cao, Z., Zhou, J., Luo, M., Arabshahi, A., McKinstry, A., Luan, C.-H., Luo, D., Johnson, D., An, J., Tsao, J., Delucas, L., Shang, Q., Gray, R., Li, S., Bray, T., Chen, Y.-J., Southeast Collaboratory for Structural Genomics (SECSG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values