Crystal structure of beta-xylosidase from clostridium acetobutylicum
Teplyakov, A., Fedorov, E., Gilliland, G.L., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-xylosidase, family 43 glycosyl hydrolase | 542 | Clostridium acetobutylicum ATCC 824 | Mutation(s): 4  Gene Names: CAC3452 (xynD) EC: 3.2.1.37 | ||
UniProt | |||||
Find proteins for Q97DM1 (Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)) Explore Q97DM1  Go to UniProtKB:  Q97DM1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q97DM1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EPE Query on EPE | H [auth A], HA [auth D], I [auth A], Y [auth C] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N | |||
SO4 Query on SO4 | F [auth A] FA [auth D] G [auth A] GA [auth D] P [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | AA [auth C] BA [auth C] CA [auth C] DA [auth C] IA [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CA Query on CA | E [auth A], EA [auth D], O [auth B], W [auth C] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 89.13 | α = 90 |
b = 143.73 | β = 90 |
c = 188.69 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
AMoRE | phasing |