1YGG

Crystal structure of phosphoenolpyruvate carboxykinase from Actinobacillus succinogenes


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1YGG

Classification: LYASE

Total Structure Weight: 62110.79

Macromolecule Entities
Molecule Chains Length Organism Details
phosphoenolpyruvate carboxykinase A 560 Actinobacillus succinogenes EC#: 4.1.1.49 IUBMB
Gene Name(s): pckA Asuc_0221
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.199
  • Space Group: P 43

Unit Cell:

Length (Å) Angle (°)
a = 102.09 α = 90.00
b = 102.09 β = 90.00
c = 72.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-01-04
  • Released Date: 2005-06-28
  • Deposition author(s): Leduc, Y.A., Prasad, L., Laivenieks, M., Zeikus, J.G., Delbaere, L.T.

Revision History

  • Version 1_0: 2005-06-28

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance