1Y6W

Trapped intermediate of calmodulin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 1Y6W

Classification: Calcium-Binding Protein

Total Structure Weight: 17444.01

Macromolecule Entities
Molecule Chains Length Organism Details
Calmodulin A 148 Homo sapiens Mutation: M36M, Q41C, M51M, D64N, M71M, M72M, K75C, M76M, M109M, M124M, M144M, M145M
Gene Name(s): CALM1 Gene View CALM CAM CAM1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TBU
Query on TBU

A TERTIARY-BUTYL ALCOHOL
2-METHYL-2-PROPANOL (Synonym)
C4 H10 O
DKGAVHZHDRPRBM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.220
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 109.88 α = 90.00
b = 109.88 β = 90.00
c = 42.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-12-07
  • Released Date: 2005-03-01
  • Deposition author(s): Grabarek, Z.

Revision History

  • Version 1_0: 2005-03-01

    Type: Initial release

  • Version 1_1: 2007-10-16

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance