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Crystal structure of human endogenous retrovirus HERV-FRD envelope protein (syncitin-2)
1Y4M
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Membrane Protein
    Structure Weight: 17404.70
    Molecule: HERV-FRD_6p24.1 provirus ancestral Env polyprotein
    Polymer: 1 Type: protein Length: 53
    Chains: A, B, C
    Fragment: Ectodomain of the transmembrane subunit (residues 391-443).
    Organism: Homo sapiens
    Gene Names: ERVFRD-1 ERVFRDE1 UNQ6191/PRO20218
    UniProtKB: Protein Feature View | Search PDB | P60508  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    1MG1   
    1MOF  Structurally and functionally related PDB entries 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CL
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    CL Cl
    CHLORIDE ION
     
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Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Renard, M.,  Varela, P.F.,  Letzelter, C.,  Duquerroy, S.,  Rey, F.A.,  Heidmann, T.

    Deposition:   2004-12-01
    Release:   2005-11-15
    Last Modified (REVDAT):   2011-11-16
     
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    2011-11-16
    Atom occupancy
    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.60
    R-Value: 0.248 (obs.)
    R-Free: 0.262
    Space Group: I 4
    Unit Cell:
      Length [Å] Angles [°]
    a = 90.40 α = 90.00 
    b = 90.40 β = 90.00 
    c = 38.65 γ = 90.00