1Y37

Structure of Fluoroacetate Dehalogenase from Burkholderia sp. FA1

• PDB DOI: https://doi.org/10.2210/pdb1Y37/pdb

• Classification: HYDROLASE
• Organism(s): Burkholderia sp. FA1
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2004-11-23 Released: 2006-02-28 
• Deposition Author(s): Omi, R.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 0.203 
• R-Value Work: 0.181 
• R-Value Observed: 0.181 

Literature

Crystal Structure of Fluoroacetate Dehalogenase FA1

Omi, R., Jitsumori, K., Kurihara, T., Esaki, N., Goto, M., Miyahara, I., Hirotsu, K.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 68.31 kDa 
• Atom Count: 4,966 
• Modelled Residue Count: 588 
• Deposited Residue Count: 608 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fluoroacetate Dehalogenase	A, B	304	Burkholderia sp. FA1	Mutation(s): 0  EC: 3.8.1.3
UniProt
Find proteins for Q1JU72 (Burkholderia sp) Explore Q1JU72  Go to UniProtKB:  Q1JU72

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG	C [auth A], D [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 0.203 
• R-Value Work: 0.181 
• R-Value Observed: 0.181 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.942	α = 90
b = 137.631	β = 95.09
c = 52.92	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-02-28 
Deposition Author(s): Omi, R.

Revision History  

• Version 1.0: 2006-02-28
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.3: 2024-02-14
  Changes: Data collection, Database references, Derived calculations