1XJT

Crystal structure of active form of P1 phage endolysin Lyz


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1XJT

Classification: HYDROLASE

Total Structure Weight: 21871.61

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme A 191 Escherichia virus p1 EC#: 3.2.1.17 IUBMB
Mutation: M18M, M23M, M50M, M101M, M109M, M116M, M131M, M149M
Gene Name(s): 17 lysa lyz
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.208
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 66.87 α = 90.00
b = 66.87 β = 90.00
c = 166.80 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-09-24
  • Released Date: 2005-01-11
  • Deposition author(s): Arockiasamy, A., Sacchettini, J.C.

Revision History

  • Version 1_0: 2005-01-11

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-11

    Type: Refinement description