1XEN

High Resolution Crystal Structure of Escherichia coli Iron- Peptide Deformylase Bound To Formate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 1XEN

Classification: HYDROLASE

Total Structure Weight: 19558.24

Macromolecule Entities
Molecule Chains Length Organism Details
Peptide deformylase A 168 Escherichia coli EC#: 3.5.1.88 IUBMB
Gene Name(s): def fms b3287 JW3248
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.173
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 54.82 α = 90.00
b = 54.82 β = 90.00
c = 224.58 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-09-10
  • Released Date: 2005-03-29
  • Deposition author(s): Jain, R., Hao, B., Liu, R.-P., Chan, M.K.

Revision History

  • Version 1_0: 2005-03-29

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Source and taxonomy, Version format compliance