Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA DOI:10.2210/pdb1x9n/pdb   NDB ID: PD0587

1X9N   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ligase/dna Structure Weight: 94110.48 Molecule: dideoxy terminated DNA Polymer: 1 Type: dna Length: 13 Chains: B Molecule: 5'-phosphorylated DNA Polymer: 2 Type: dna Length: 15 Chains: C Molecule: template DNA Polymer: 3 Type: dna Length: 28 Chains: D Molecule: DNA ligase I Polymer: 4 Type: protein Length: 688 Chains: A EC#: 6.5.1.1    Organism Homo sapiens Gene Name LIG1 UniProtKB:   Protein Feature View | Search PDB | P18858         Source Hide Polymer: 1 Scientific Name: Synthetic construct   Taxonomy     Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Synthetic construct   Taxonomy     Polymer: 4 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli       Ligand Chemical Component Hide Identifier Formula Name Interactions AMP Search  Download  C10 H14 N5 O7 P ADENOSINE MONOPHOSPHATE   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type DOC Search  C9 H14 N3 O6 P DC dnaLinking MSE Search  C5 H11 N O2 Se MET lPeptideLinking     External Domain Annotations Hide SCOP Classification v1.75: 3 Domains - data from SCOP   CATH Classification v3.4.0: 4 Domains - data from CATH   Pfam Classification: 3 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: PD0587     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Pascal, J.M.,  O'Brien, P.J.,  Tomkinson, A.E.,  Ellenberger, T. Deposition:   2004-08-23 Release:   2004-11-30 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Flag residual B-value 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   3.00 R-Value: 0.236 (obs.) R-Free: 0.268 Space Group: P 63 Unit Cell:   Length [Å] Angles [°] a = 161.89 α = 90.00  b = 161.89 β = 90.00  c = 88.46 γ = 120.00