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Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA
 
 
DOI:10.2210/pdb1x9n/pdb   NDB ID: PD0587
1X9N
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Ligase/dna
    Structure Weight: 94110.48
     
    Molecule:dideoxy terminated DNA
    Polymer:1Type:polydeoxyribonucleotideLength:13
    Chains:B
    Molecule:5'-phosphorylated DNA
    Polymer:2Type:polydeoxyribonucleotideLength:15
    Chains:C
    Molecule:template DNA
    Polymer:3Type:polydeoxyribonucleotideLength:28
    Chains:D
    Molecule:DNA ligase I
    Polymer:4Type:polypeptide(L)Length:688
    Chains:A
    EC#:6.5.1.1 Go to IUBMB EC entry  
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 3
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 4
    Scientific Name: Homo sapiens Go to NCBI Taxonomy entry Common Name: Human Expression System: Escherichia coli  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    AMP     ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P 3DLigand Explorer Link out to Ligand Expos:AMP Link out to SuperLigands:AMP Link out to SuperHapten:AMP
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE (parent: DC)(type: dnaLinking) C9 H14 N3 O6 P 3D Ligand Explorer Link out to Ligand Expos:DOC Link out to SuperLigands:DOC Link out to SuperHapten:DOC 2D
    MSE SELENOMETHIONINE (parent: MET)(type: lPeptideLinking) C5 H11 N O2 Se 3D Ligand Explorer Link out to Ligand Expos:MSE Link out to SuperLigands:MSE Link out to SuperHapten:MSE 2D
     
     
  •  
    Move Section Derived Data Hide
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Pascal, J.M.,   O`Brien, P.J.,   Tomkinson, A.E.,   Ellenberger, T.

    Deposition:   2004-08-23
    Release:   2004-11-30
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 3.00
    R-Value: 0.236 (obs.)
    R-Free: 0.268
    Space Group: P 63
    Unit Cell:
      Length [Å] Angles [°]
    a = 161.89 α = 90.00 
    b = 161.89 β = 90.00 
    c = 88.46 γ = 120.00