Crystal Structure of Activated Rice Rubisco Complexed with 2-Carboxyarabinitol-1,5-bisphosphate DOI:10.2210/pdb1wdd/pdb

1WDD   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Lyase Structure Weight: 138274.44 Molecule: Ribulose bisphosphate carboxylase large chain Polymer: 1 Type: protein Length: 477 Chains: A, E EC#: 4.1.1.39    Organism Oryza sativa Japonica Group Gene Names rbcL Nip064 UniProtKB:   Protein Feature View | Search PDB | P0C512     Molecule: Ribulose bisphosphate carboxylase small chain C Polymer: 2 Type: protein Length: 128 Chains: S, W EC#: 4.1.1.39    Organism Oryza sativa Japonica Group Gene Names RBCS RBCS-C Os12g0274700 LOC_Os12g17600 OsJ_016909 UniProtKB:   Protein Feature View | Search PDB | Q0INY7         Source Hide Polymer: 1 Scientific Name: Oryza sativa japonica group   Taxonomy   Common Name: Japanese rice   Polymer: 2 Scientific Name: Oryza sativa japonica group   Taxonomy   Common Name: Japanese rice       Ligand Chemical Component Hide Identifier Formula Name Interactions CAP Search  Download  C6 H14 O13 P2 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE   Ligand Explorer GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type KCX Search  C7 H14 N2 O4 LYS lPeptideLinking MME Search  C6 H13 N O2 S MET lPeptideLinking     External Domain Annotations Hide SCOP Classification v1.75: 6 Domains - data from SCOP   CATH Classification v3.4.0: 6 Domains - data from CATH   Pfam Classification: 3 Domains - data from Pfam   GO Terms: 13 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA,PQS (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Mizohata, E.,  Matsumura, H.,  Ueno, T.,  Ishida, H.,  Inoue, T.,  Makino, A.,  Mae, T.,  Kai, Y. Deposition:   2004-05-13 Release:   2004-11-13 Last Modified (REVDAT):   2012-06-13     Revision History    Hide Mouse over text for details 2012-06-13 Citation 2011-07-13 Version format compliance 2011-07-13 Biological assembly     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.35 R-Value: 0.160 (obs.) R-Free: 0.182 Space Group: I 4 Unit Cell:   Length [Å] Angles [°] a = 111.71 α = 90.00  b = 111.71 β = 90.00  c = 196.78 γ = 90.00      Molecule of the Month Hide Rubisco