COMPLETE 12-SUBUNIT RNA POLYMERASE II AT 3.8 ANG
1WCM
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription
    Structure Weight: 509590.75
    Molecule: DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
    Polymer: 1 Type: protein Length: 1733
    Chains: A
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPO21 RPB1 RPB220 SUA8 YDL140C D2150
    UniProtKB: Protein Feature View | Search PDB | P04050  
    Molecule: DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
    Polymer: 2 Type: protein Length: 1224
    Chains: B
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB2 RPB150 RPO22 YOR151C
    UniProtKB: Protein Feature View | Search PDB | P08518  
    Molecule: DNA-DIRECTED RNA POLYMERASE II 45 KDA POLYPEPTIDE
    Polymer: 3 Type: protein Length: 318
    Chains: C
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB3 YIL021W
    UniProtKB: Protein Feature View | Search PDB | P16370  
    Molecule: DNA-DIRECTED RNA POLYMERASE II 32 KDA POLYPEPTIDE
    Polymer: 4 Type: protein Length: 177
    Chains: D
    EC#: 2.7.7.6   
    Details: NUMBERING OF RESIUDES D10-D24 IS ARBITRARY
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB4 YJL140W J0654
    UniProtKB: Protein Feature View | Search PDB | P20433  
    Molecule: DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE
    Polymer: 5 Type: protein Length: 215
    Chains: E
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB5 RPA7 RPC9 YBR154C YBR1204
    UniProtKB: Protein Feature View | Search PDB | P20434  
    Molecule: DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE
    Polymer: 6 Type: protein Length: 155
    Chains: F
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPO26 RPB6 YPR187W P9677.8
    UniProtKB: Protein Feature View | Search PDB | P20435  
    Molecule: DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE
    Polymer: 7 Type: protein Length: 171
    Chains: G
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB7 YDR404C D9509.22
    UniProtKB: Protein Feature View | Search PDB | P34087  
    Molecule: DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE
    Polymer: 8 Type: protein Length: 146
    Chains: H
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB8 YOR224C YOR50-14
    UniProtKB: Protein Feature View | Search PDB | P20436  
    Molecule: DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE
    Polymer: 9 Type: protein Length: 122
    Chains: I
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB9 YGL070C
    UniProtKB: Protein Feature View | Search PDB | P27999  
    Molecule: DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE
    Polymer: 10 Type: protein Length: 70
    Chains: J
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB10 YOR210W
    UniProtKB: Protein Feature View | Search PDB | P22139  
    Molecule: DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE
    Polymer: 11 Type: protein Length: 120
    Chains: K
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPB11 YOL005C
    UniProtKB: Protein Feature View | Search PDB | P38902  
    Molecule: DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE
    Polymer: 12 Type: protein Length: 70
    Chains: L
    EC#: 2.7.7.6   
    Organism: Saccharomyces cerevisiae
    Gene Names: RPC10 RPB12 YHR143W-A YHR143BW
    UniProtKB: Protein Feature View | Search PDB | P40422  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 6
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast Expression System: Escherichia coli  
    Polymer: 8
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 9
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 10
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 11
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 12
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
     
  •   Related PDB Entries Hide
    Identifier Details
    1I3Q   RNA POLYMERASE II CRYSTAL FORM I AT 3.1A RESOLUTION 
    1I50   RNA POLYMERASE II CRYSTAL FORM II AT 2.8A RESOLUTION 
    1I6H   RNA POLYMERASE II ELONGATION COMPLEX 
    1K83   CRYSTAL STRUCTURE OF YEAST RNA POLYMERASE II COMPLEXED WITH THE INHIBITOR ALPHA AMANITIN 
    1NIK   WILD TYPE RNA POLYMERASE II 
    1NT9   COMPLETE 12-SUBUNIT RNA POLYMERASE II 
    1PQV   RNA POLYMERASE II-TFIIS COMPLEX 
    1R5U   RNA POLYMERASE II TFIIB COMPLEX 
    1R9S   RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE 
    1R9T   RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE 
    1SFO   RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX 
    1TWA   RNA POLYMERASE II COMPLEXED WITH ATP 
    1TWC   RNA POLYMERASE II COMPLEXED WITH GTP 
    1TWF   RNA POLYMERASE II COMPLEXED WITH UTP AT 2.3A RESOLUTION 
    1TWG   RNA POLYMERASE II COMPLEXED WITH CTP 
    1TWH   RNA POLYMERASE II COMPLEXED WITH 2'DATP 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
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