1VRP

The 2.1 Structure of T. californica Creatine Kinase Complexed with the Transition-State Analogue Complex, ADP-Mg 2+ /NO3-/Creatine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.242

Literature

Macromolecules
Sequence Display for 1VRP

Classification: TRANSFERASE

Total Structure Weight: 87096.16

Macromolecule Entities
Molecule Chains Length Organism Details
Creatine Kinase, M chain A, B 381 Tetronarce californica EC#: 2.7.3.2 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IOM
Query on IOM

B (DIAMINOMETHYL-METHYL-AMINO)-ACETIC ACID
C4 H11 N3 O2
YNHURFGTTODJOO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO3
Query on NO3

B NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.242
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 70.63 α = 90.00
b = 87.19 β = 90.00
c = 127.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-04-25
  • Released Date: 2005-05-03
  • Deposition author(s): Lahiri, S.D., Wang, P.F., Babbitt, P.C., McLeish, M.J., Kenyon, G.L., Allen, K.N.
  • Previous versions: 1N16

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance