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CRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE IMMUNOGLOBULIN KB DNA
DOI:10.2210/pdb1vkx/pdb   NDB ID: PDR033
1VKX
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 73235.36
    Molecule: DNA (5'-D(*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*C)-3')
    Polymer: 1 Type: dna Length: 12
    Chains: C
    Details: ACTIVE NF-KAPPA-B IS A HETERODIMER OF AN ABOUT 50 KD DNA-BINDING SUBUNIT AND THE WEAK DNA-BINDING SUBUNIT P65
    Molecule: DNA (5'-D(*AP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*C)-3')
    Polymer: 2 Type: dna Length: 12
    Chains: D
    Details: ACTIVE NF-KAPPA-B IS A HETERODIMER OF AN ABOUT 50 KD DNA-BINDING SUBUNIT AND THE WEAK DNA-BINDING SUBUNIT P65
    Molecule: PROTEIN (NF-KAPPA B P65 SUBUNIT)
    Polymer: 3 Type: protein Length: 273
    Chains: A
    Organism Mus musculus
    Gene Names Rela Nfkb3
    UniProtKB:   Protein Feature View | Search PDB | Q04207  
    Molecule: PROTEIN (NF-KAPPA B P50 SUBUNIT)
    Polymer: 4 Type: protein Length: 312
    Chains: B
    Organism Mus musculus
    Gene Name Nfkb1
    UniProtKB:   Protein Feature View | Search PDB | P25799  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse  
    Polymer: 4
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PDR033
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Chen, F.,  Huang, D.B.,  Ghosh, G.

    Deposition:   1997-09-17
    Release:   1998-12-09
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.90
    R-Value: 0.208 (obs.)
    R-Free: 0.320
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 106.61 α = 90.00 
    b = 106.61 β = 90.00 
    c = 206.56 γ = 90.00