1VK5

X-ray Structure of Gene Product from Arabidopsis Thaliana At3g22680


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 1VK5

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 19154.49

Macromolecule Entities
Molecule Chains Length Organism Details
expressed protein A 157 Arabidopsis thaliana Gene Name(s): RDM1 Gene View At3g22680 MWI23.5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CPS
Query on CPS

A 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- PROPANESULFONATE
CHAPS (Synonym)
C32 H58 N2 O7 S
UMCMPZBLKLEWAF-BCTGSCMUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.160
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 83.45 α = 90.00
b = 83.45 β = 90.00
c = 60.58 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-05-06
  • Released Date: 2004-05-18
  • Deposition author(s): Wesenberg, G.E., Smith, D.W., Phillips Jr., G.N., Johnson, K.A., Bingman, C.A., Allard, S.T.M., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • 2008-02-01
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance