1V04

SERUM PARAOXONASE BY DIRECTED EVOLUTION

Structural Biology Knowledgebase: 1V04 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1V04

Classification: HYDROLASE

Total Structure Weight: 39779.53

Macromolecule Entities
Molecule Chains Length Organism Details
SERUM PARAOXONASE/ARYLESTERASE 1 A 355 Homo sapiens Oryctolagus cuniculus Mus musculus Rattus rattus EC#: 3.1.1.2 IUBMB 3.1.8.1 IUBMB
Details: PARAOXONASE-1 (PON1)
Gene Name(s): PON1 Gene View PON

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.185
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 98.44 α = 90.00
b = 98.44 β = 90.00
c = 139.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-22
  • Released Date: 2004-04-23
  • Deposition author(s): Harel, M., Aharoni, A., Gaidukov, L., Brumshtein, B., Khersonsky, O., Yagur, S., Meged, R., Dvir, H., Ravelli, R.B.G., Mccarthy, A., Toker, L., Silman, I., Sussman, J.L., Tawfik, D.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4