1UOU

CRYSTAL STRUCTURE OF HUMAN THYMIDINE PHOSPHORYLASE IN COMPLEX WITH A SMALL MOLECULE INHIBITOR

Structural Biology Knowledgebase: 1UOU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.11 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1UOU

Classification: TRANSFERASE

Total Structure Weight: 49438.50

Macromolecule Entities
Molecule Chains Length Organism Details
THYMIDINE PHOSPHORYLASE A 474 Homo sapiens EC#: 2.4.2.4 IUBMB
Fragment: RESIDUES 12-408,411-482
Gene Name(s): TYMP Gene View ECGF1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CMU
Query on CMU

A 5-CHLORO-6-(1-(2-IMINOPYRROLIDINYL) METHYL) URACIL
4(1H, (Synonym)
C9 H11 Cl N4 O2
QQHMKNYGKVVGCZ-WDZFZDKYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
CMU IC50: 20 - 35 nM (99) BindingDB
Ki: 1.3 - 20 nM (99) BindingDB

Ki: 20 nM  BindingMOAD
Ki: 20 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.11 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.188
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.99 α = 90.00
b = 66.09 β = 106.54
c = 96.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-09-23
  • Released Date: 2004-01-22
  • Deposition author(s): Norman, R.A., Barry, S.T., Bate, M., Breed, J., Colls, J.G., Ernill, R.J., Luke, R.W.A., Minshull, C.A., Mcalister, M.S.B., Mccall, E.J., Mcmiken, H.H.J., Paterson, D.S., Timms, D., Tucker, J.A., Pauptit, R.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4