DNA binding and cleavage by the HNH homing endonuclease I-HmuI DOI:10.2210/pdb1u3e/pdb   NDB ID: PD0575

1U3E   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: DNA Binding Protein/dna Structure Weight: 42874.31 Molecule: 36-MER Polymer: 1 Type: dna Length: 36 Chains: A Molecule: 5'-D(*CP*TP*TP*AP*CP*GP*TP*GP*GP*GP*AP*AP*TP*TP*GP*CP*TP*GP*AP*GP*C)-3' Polymer: 2 Type: dna Length: 21 Chains: B Molecule: 5'-D(P*GP*TP*TP*AP*GP*GP*CP*TP*CP*AP*TP*TP*AP*CP*T)-3' Polymer: 3 Type: dna Length: 15 Chains: C Molecule: HNH homing endonuclease Polymer: 4 Type: protein Length: 174 Chains: M EC#: 3.1    Organism Bacillus phage SPO1 UniProtKB:   Protein Feature View | Search PDB | P34081         Source Hide Polymer: 1 Scientific Name: Synthetic construct   Taxonomy     Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Synthetic construct   Taxonomy     Polymer: 4 Scientific Name: Bacillus phage spo1   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1A73  Intron-encoded endonuclease I-Ppo1 complexed with DNA (His-Cys box)  1FSJ  Crystal structure of the E9 Dnase domain (non-specific HNH nuclease)  1I3J  DNA-binding domain of Intron endonuclease I-Tevi with substrate  1PT3  crystal structure of Nuclease-Cole& complexed with Octamer DNA (non-specific HNH nuclease)      Ligand Chemical Component Hide Identifier Formula Name Interactions EDO Search  Download  C2 H6 O2 1,2-ETHANEDIOL   Ligand Explorer MN Search  Download  Mn MANGANESE (II) ION   Ligand Explorer SR Search  Download  Sr STRONTIUM ION   Ligand Explorer TRS Search  Download  C4 H12 N O3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 2 Domains - data from SCOP   CATH Classification v3.4.0: 1 Domain - data from CATH   Pfam Classification: 2 Domains - data from Pfam   GO Terms: 7 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: PD0575     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Shen, B.W.,  Landthaler, M.,  Shub, D.A.,  Stoddard, B.L. Deposition:   2004-07-21 Release:   2004-08-31 Last Modified (REVDAT):   2011-11-16     Revision History    Hide Mouse over text for details 2011-11-16 Atom occupancy 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.92 R-Value: 0.220 (obs.) R-Free: 0.247 Space Group: I 2 2 2 Unit Cell:   Length [Å] Angles [°] a = 45.00 α = 90.00  b = 108.30 β = 90.00  c = 248.10 γ = 90.00