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RNA polymerase II complexed with UTP at 2.3 A resolution
1TWF
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Transcription
    Structure Weight: 470745.17
    Molecule: DNA-directed RNA polymerase II largest subunit
    Polymer: 1 Type: protein Length: 1733
    Chains: A
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPO21 RPB1 RPB220 SUA8 YDL140C D2150
    UniProtKB:   Protein Feature View | Search PDB | P04050  
    Molecule: DNA-directed RNA polymerase II 140 kDa polypeptide
    Polymer: 2 Type: protein Length: 1224
    Chains: B
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB2 RPB150 RPO22 YOR151C
    UniProtKB:   Protein Feature View | Search PDB | P08518  
    Molecule: DNA-directed RNA polymerase II 45 kDa polypeptide
    Polymer: 3 Type: protein Length: 318
    Chains: C
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB3 YIL021W
    UniProtKB:   Protein Feature View | Search PDB | P16370  
    Molecule: DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide
    Polymer: 4 Type: protein Length: 215
    Chains: E
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB5 RPA7 RPC9 YBR154C YBR1204
    UniProtKB:   Protein Feature View | Search PDB | P20434  
    Molecule: DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide
    Polymer: 5 Type: protein Length: 155
    Chains: F
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPO26 RPB6 YPR187W P9677.8
    UniProtKB:   Protein Feature View | Search PDB | P20435  
    Molecule: DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide
    Polymer: 6 Type: protein Length: 146
    Chains: H
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB8 YOR224C YOR50-14
    UniProtKB:   Protein Feature View | Search PDB | P20436  
    Molecule: DNA-directed RNA polymerase II 14.2 kDa polypeptide
    Polymer: 7 Type: protein Length: 122
    Chains: I
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB9 YGL070C
    UniProtKB:   Protein Feature View | Search PDB | P27999  
    Molecule: DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide
    Polymer: 8 Type: protein Length: 70
    Chains: J
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB10 YOR210W
    UniProtKB:   Protein Feature View | Search PDB | P22139  
    Molecule: DNA-directed RNA polymerase II 13.6 kDa polypeptide
    Polymer: 9 Type: protein Length: 120
    Chains: K
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB11 YOL005C
    UniProtKB:   Protein Feature View | Search PDB | P38902  
    Molecule: DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide
    Polymer: 10 Type: protein Length: 70
    Chains: L
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPC10 RPB12 YHR143W-A YHR143BW
    UniProtKB:   Protein Feature View | Search PDB | P40422  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 5
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 6
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 8
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 9
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 10
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
     
  •   Related PDB Entries Hide
    Identifier Details
    1twa   
    1twc   
    1twg   
    1twh   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    MN
    Search 
    Download      		MN Mn
    MANGANESE (II) ION
    UTP
    Search 
    Download      		UTP C9 H15 N2 O15 P3
    URIDINE 5'-TRIPHOSPHATE
    ZN
    Search 
    Download      		ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Westover, K.D.,  Bushnell, D.A.,  Kornberg, R.D.

    Deposition:   2004-06-30
    Release:   2004-11-16
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
    2011-07-13
    Biological assembly
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.30
    R-Value: 0.260 (obs.)
    R-Free: 0.294
    Space Group: I 2 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 123.00 α = 90.00 
    b = 223.00 β = 90.00 
    c = 374.00 γ = 90.00