Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 17mer epitope DOI:10.2210/pdb1tji/pdb

1TJI   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Viral Protein/immune System Structure Weight: 51328.17 Molecule: anti-HIV-1 antibody 2F5 Light Chain Polymer: 1 Type: protein Length: 214 Chains: L Organism Homo sapiens Molecule: anti-HIV-1 antibody 2F5 Heavy Chain Polymer: 2 Type: protein Length: 237 Chains: H Organism Homo sapiens Molecule: Envelope Glycoprotein GP41 Polymer: 3 Type: protein Length: 18 Chains: P Fragment: Transmembrane Glycoprotein (residues 653-659) Gene Name env UniProtKB:   Protein Feature View | Search PDB | P04580         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus   Polymer: 3 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1TJG  2F5 Fab complexed with a gp41 7mer  1TJH  2F5 Fab complexed with a gp41 11mer  2F5B  2F5 in complex with its gp41 epitope      Ligand Chemical Component Hide Identifier Formula Name Interactions EDO Search  Download  C2 H6 O2 1,2-ETHANEDIOL   Ligand Explorer IPA Search  Download  C3 H8 O ISOPROPYL ALCOHOL   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type YCM Search  C5 H10 N2 O3 S CYS lPeptideLinking NH2 Search  H2 N nonPolymer     External Domain Annotations Hide SCOP Classification v1.75: 4 Domains - data from SCOP   CATH Classification v3.4.0: 4 Domains - data from CATH   Pfam Classification: 8 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Ofek, G.,  Tang, M.,  Sambor, A.,  Katinger, H.,  Mascola, J.R.,  Wyatt, R.,  Kwong, P.D. Deposition:   2004-06-04 Release:   2004-10-05 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.20 R-Value: 0.183 (obs.) R-Free: 0.221 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 58.66 α = 90.00  b = 63.68 β = 90.00  c = 178.38 γ = 90.00      Molecule of the Month Hide Epidermal Growth Factor Nanobodies Antibodies Hemagglutinin