HIV-1 reverse transcriptase crosslinked to tenofovir terminated template-primer (complex P)
DOI:10.2210/pdb1t03/pdb   NDB ID: PD0536
1T03
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/antibody/dna
    Structure Weight: 177532.46
    Molecule: Synthetic oligonucleotide template
    Polymer: 1 Type: dna Length: 27
    Chains: T
    Molecule: Synthetic oligonucleotide primer
    Polymer: 2 Type: dna Length: 21
    Chains: P
    Molecule: POL polyprotein
    Polymer: 3 Type: protein Length: 558
    Chains: A
    EC#: 2.7.7.49   
    Fragment: Reverse transcriptase, p66 subunit
    Mutation: Q258C, C280S
    Organism: Human immunodeficiency virus 1
    Gene Name: gag-pol
    UniProtKB: Search PDB | P03366   Protein Feature View
    Molecule: POL polyprotein
    Polymer: 4 Type: protein Length: 437
    Chains: B
    EC#: 2.7.7.49   
    Fragment: Reverse transcriptase, p51 subunit
    Mutation: C280S
    Organism: Human immunodeficiency virus 1
    Gene Name: gag-pol
    UniProtKB: Search PDB | P03366   Protein Feature View
    Molecule: monoclonal antibody light chain
    Polymer: 5 Type: protein Length: 211
    Chains: L
    Fragment: Fab light chain domain
    Organism: Mus musculus
    Molecule: monoclonal antibody heavy chain
    Polymer: 6 Type: protein Length: 225
    Chains: H
    Fragment: Fab heavy chain domain
    Organism: Mus musculus
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse  
    Polymer: 6
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse  
     
  •   Related PDB Entries Hide
    Identifier Details
    1N5Y   HIV-1 Reverse Transcriptase Crosslinked To Post-Translocation Aztmp-Terminated DNA (Complex P) 
    1N6Q   HIV-1 Reverse Transcriptase Crosslinked To Pre-Translocation Aztmp-Terminated DNA (Complex N) 
    1T05   HIV-1 reverse transcriptase crosslinked to template-primer with tenofovir-diphosphate bound as the incoming nucleotide substrate 
    2HMI   HIV-1 Reverse Transcriptase Complexed With A Double-Stranded DNA and Fab28 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MRG
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    MRG C13 H20 N5 O7 P S DG dnaLinking
    TFO
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    TFO C9 H14 N5 O4 P DA dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD0536
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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