1SVL

Co-crystal structure of SV40 large T antigen helicase domain and ADP

Structural Biology Knowledgebase: 1SVL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.236

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1SVL

Classification: Viral protein

Total Structure Weight: 132176.09

Macromolecule Entities
Molecule Chains Length Organism Details
large T antigen A, B, C 377 Simian virus 40 EC#: 3.6.4 IUBMB
Fragment: HELICASE DOMAIN
Gene Name(s):

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B, C ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.236
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 195.81 α = 90.00
b = 86.44 β = 129.00
c = 128.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-29
  • Released Date: 2004-10-19
  • Deposition author(s): Gai, D., Zhao, R., Finkielstein, C.V., Chen, X.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4