1SVL

Co-crystal structure of SV40 large T antigen helicase domain and ADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.236

Literature

Macromolecules
Sequence Display for 1SVL

Classification: VIRAL PROTEIN

Total Structure Weight: 132175.02

Macromolecule Entities
Molecule Chains Length Organism Details
large T antigen A, B, C 377 Macaca mulatta polyomavirus 1 EC#: 3.6.4 IUBMB
Fragment: HELICASE DOMAIN
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B, C ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.236
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 195.81 α = 90.00
b = 86.44 β = 129.00
c = 128.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-29
  • Released Date: 2004-10-19
  • Deposition author(s): Gai, D., Zhao, R., Finkielstein, C.V., Chen, X.S.

Revision History

  • Version 1_0: 2004-10-19

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance