1SV5

CRYSTAL STRUCTURE OF K103N MUTANT HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R165335

Structural Biology Knowledgebase: 1SV5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.326
  • R-Value Work: 0.255

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1SV5

Classification: TRANSFERASE

Total Structure Weight: 115189.16

Macromolecule Entities
Molecule Chains Length Organism Details
Reverse Transcriptase A 560 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: P66 SUBUNIT
Mutation: K103N, C280S
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Reverse Transcriptase B 430 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: P51 SUBUNIT
Mutation: K103N, C280S
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
65B
Query on 65B

A 4-({6-AMINO-5-BROMO-2-[(4-CYANOPHENYL)AMINO]PYRIMIDIN- 4-YL}OXY)-3,5-DIMETHYLBENZONITRILE
Etravine; Etravirine (Synonym)
C20 H15 Br N6 O
PYGWGZALEOIKDF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
65B IC50: 10 - 164 nM (96) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.326
  • R-Value Work: 0.255
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 222.51 α = 90.00
b = 67.74 β = 107.47
c = 103.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-27
  • Released Date: 2004-05-11
  • Deposition author(s): Das, K., Arnold, E.

Revision History

  • 2012-07-18
    Type: Non-polymer description | Details: Update synonym of 65B
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4