RCSB Protein Data Bank - RCSB PDB - 1SL6 Structure Summary

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Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.

DOI:10.2210/pdb1sl6/pdb

1SL6

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Primary Citation

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Molecular Description

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Classification:	Sugar Binding Protein
Structure Weight:	132567.08

Molecule:

C-type lectin DC-SIGNR

Polymer:

Type:

protein

Length:

184

Chains:

A, B, C, D, E, F

Details:

A fragment containing the CRD domain and two repeats from the neck domain

Organism

Homo sapiens

Gene Names

CLEC4M CD209L CD209L1 CD299

UniProtKB:

| | Q9H2X3

Source

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Polymer: 1

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Escherichia coli

Polymer: 2

Scientific Name:

Synthetic construct

Taxonomy

Ligand Chemical Component

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Identifier	Formula	Name	Interactions
CA Search Download	Ca	CALCIUM ION		Ligand Explorer
FUC Search Download	C₆ H₁₂ O₅	ALPHA-L-FUCOSE		Ligand Explorer
GAL Search Download	C₆ H₁₂ O₆	BETA-D-GALACTOSE		Ligand Explorer
NDG Search Download	C₈ H₁₅ N O₆	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE		Ligand Explorer

External Domain Annotations Hide
SCOP Classification v1.75: 6 Domains - data from SCOP

CATH Classification v3.4.0: 6 Domains - data from CATH

Pfam Classification: 1 Domain - data from Pfam
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

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Biological Assembly 1

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Biological assembly 1 assigned by authors

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Deposition Summary

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Authors: Guo, Y., Feinberg, H., Conroy, E., Mitchell, D.A., Alvarez, R., Blixt, O., Taylor, M.E., Weis, W.I., Drickamer, K.

Deposition:	2004-03-05
Release:	2004-06-15
Last Modified (REVDAT):	2009-02-24

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2011-07-13
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Experimental Details

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Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS

Unit Cell:
	Length [Å]	Angles [°]
	a = 153.75	α = 90.00
	b = 153.75	β = 90.00
	c = 128.70	γ = 120.00