1S3R

Crystal structure of the human-specific toxin intermedilysin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1S3R

Classification: TOXIN

Total Structure Weight: 118514.00

Macromolecule Entities
Molecule Chains Length Organism Details
intermedilysin A, B 535 Streptococcus intermedius Gene Name(s): ily
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.229
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 88.45 α = 90.00
b = 173.64 β = 90.00
c = 105.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-01-14
  • Released Date: 2005-01-25
  • Deposition author(s): Polekhina, G., Giddings, K.S., Tweten, R.K., Parker, M.W.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Advisory, Derived calculations, Version format compliance