crystal structure of transcriptional regulator-phosphoprotein-DNA complex
DOI:10.2210/pdb1rzr/pdb   NDB ID: PD0507
1RZR
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/transport Protein/dna
    Structure Weight: 205716.22
    Molecule: 5'-D(*CP*TP*GP*AP*AP*AP*GP*CP*GP*CP*TP*AP*AP*CP*AP*G)-3'
    Polymer: 1 Type: dna Length: 16
    Chains: E, H
    Molecule: 5'-D(*CP*TP*GP*TP*TP*AP*GP*CP*GP*CP*TP*TP*TP*CP*AP*G)-3'
    Polymer: 2 Type: dna Length: 16
    Chains: B, R
    Molecule: Glucose-resistance amylase regulator
    Polymer: 3 Type: protein Length: 332
    Chains: A, C, G
    Fragment: transcriptional regulator
    Organism: Bacillus megaterium
    Gene Name: ccpA
    UniProtKB: Protein Feature View | Search PDB | P46828  
    Molecule: Glucose-resistance amylase regulator
    Polymer: 4 Type: protein Length: 332
    Chains: D
    Organism: Bacillus megaterium
    Gene Name: ccpA
    UniProtKB: Protein Feature View | Search PDB | P46828  
    Molecule: Phosphocarrier protein HPr
    Polymer: 5 Type: protein Length: 88
    Chains: L, S, T, Y
    EC#: 2.7.11   
    Organism: Bacillus megaterium
    Gene Name: ptsH
    UniProtKB: Protein Feature View | Search PDB | O69250  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Bacillus megaterium   Taxonomy   Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Bacillus megaterium   Taxonomy   Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Bacillus megaterium   Taxonomy   Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
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    MSE C5 H11 N O2 Se MET lPeptideLinking
    SEP
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    SEP C3 H8 N O6 P SER lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD0507
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Schumacher, M.A.,  Allen, G.S.,  Brennan, R.G.

    Deposition:   2003-12-27
    Release:   2004-10-12
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.80
    R-Value: 0.242 (obs.)
    R-Free: 0.288
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 105.71 α = 90.00 
    b = 109.24 β = 90.05 
    c = 117.81 γ = 90.00