HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B DOI:10.2210/pdb1rzj/pdb

1RZJ   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Viral Protein/immune System Structure Weight: 107239.82 Molecule: ENVELOPE GLYCOPROTEIN GP120 Polymer: 1 Type: protein Length: 321 Chains: G Fragment: CORE Mutation: VARIABLE LOOPS SUBSTITUTED Details: part of Envelope polyprotein GP160 Organism Human immunodeficiency virus 1 Gene Name env UniProtKB:   Protein Feature View | Search PDB | P04578     Molecule: T-CELL SURFACE GLYCOPROTEIN CD4 Polymer: 2 Type: protein Length: 185 Chains: C Fragment: D1D2, N-TERMINAL TWO DOMAIN FRAGMENT Mutation: S184N, I185T Organism Homo sapiens Gene Name CD4 UniProtKB:   Protein Feature View | Search PDB | P01730     Molecule: ANTIBODY 17B, LIGHT CHAIN Polymer: 3 Type: protein Length: 214 Chains: L Fragment: FAB Organism Homo sapiens Molecule: ANTIBODY 17B, HEAVY CHAIN Polymer: 4 Type: protein Length: 229 Chains: H Fragment: FAB Organism Homo sapiens     Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Drosophila melanogaster   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus   Polymer: 3 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Human herpesvirus 4   Polymer: 4 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Human herpesvirus 4   Polymer: 7 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1G9M  This deposit if the re-refinement of previously determined structure 1G9M with correct Fab 17b sequences  1RZ7    1RZ8    1RZF    1RZG    1RZI    1RZK        Ligand Chemical Component Hide Identifier Formula Name Interactions FUC Search  Download  C6 H12 O5 ALPHA-L-FUCOSE   Ligand Explorer IPA Search  Download  C3 H8 O ISOPROPYL ALCOHOL   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer NDG Search  Download  C8 H15 N O6 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 7 Domains - data from SCOP   CATH Classification v3.4.0: 7 Domains - data from CATH   Pfam Classification: 22 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Huang, C.C.,  Venturi, M.,  Majeed, S.,  Moore, M.J.,  Phogat, S.,  Zhang, M.-Y.,  Dimitrov, D.S.,  Hendrickson, W.A.,  Robinson, J.,  Sodroski, J.,  Wyatt, R.,  Choe, H.,  Farzan, M.,  Kwong, P.D. Deposition:   2003-12-24 Release:   2004-02-03 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Non-polymer description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.20 R-Value: 0.262 (obs.) R-Free: 0.323 Space Group: P 2 2 21 Unit Cell:   Length [Å] Angles [°] a = 71.25 α = 90.00  b = 88.11 β = 90.00  c = 196.54 γ = 90.00      Molecule of the Month Hide Epidermal Growth Factor Nanobodies Antibodies T-Cell Receptor Hemagglutinin