1RX0

Crystal structure of isobutyryl-CoA dehydrogenase complexed with substrate/ligand.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 1RX0

Classification: OXIDOREDUCTASE

Total Structure Weight: 176903.89

Macromolecule Entities
Molecule Chains Length Organism Details
Acyl-CoA dehydrogenase family member 8, mitochondrial A, B, C, D 393 Homo sapiens EC#: 1.3.99 IUBMB
Gene Name(s): ACAD8 Gene View ARC42 IBD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2MC
Query on 2MC

C, D METHACRYLYL-COENZYME A
C25 H40 N7 O17 P3 S
NPALUEYCDZWBOV-NDZSKPAWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FAD
Query on FAD

A, B, C, D FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

A, B, C, D ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.179
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 97.20 α = 90.00
b = 134.34 β = 90.00
c = 189.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-18
  • Released Date: 2004-04-20
  • Deposition author(s): Battaile, K.P., Nguyen, T.V., Vockley, J., Kim, J.J.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance