1RUY

1930 Swine H1 Hemagglutinin

Structural Biology Knowledgebase: 1RUY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.248

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1RUY

Classification: Viral Protein

Total Structure Weight: 165022.89

Macromolecule Entities
Molecule Chains Length Organism Details
hemagglutinin H, J, L 328 Influenza a virus Details: Hemagglutinin HA1 chain
Gene Name(s): HA
hemagglutinin I, K, M 160 Influenza a virus Details: Hemagglutinin HA2 chain
Gene Name(s): HA

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

H, J, L 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

H, J, L N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.248
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 203.11 α = 90.00
b = 83.28 β = 106.67
c = 178.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-12
  • Released Date: 2004-03-30
  • Deposition author(s): Skehel, J.J., Gamblin, S.J., Haire, L.F., Russell, R.J., Stevens, D.J., Xiao, B., Ha, Y., Vasisht, N., Steinhauer, D.A., Daniels, R.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update