1RQB

Propionibacterium shermanii transcarboxylase 5S subunit

Structural Biology Knowledgebase: 1RQB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.162

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1RQB

Classification: TRANSFERASE

Total Structure Weight: 60837.57

Macromolecule Entities
Molecule Chains Length Organism Details
transcarboxylase 5S subunit A 539 Propionibacterium freudenreichii EC#: 2.1.3.1 IUBMB
Mutation: M29M, M33M, M35M, M38M, M83M, M90M, M120M, M129M, M135M, M139M, M176M, K184X, M186M, M228M, M245M, M260M, M311M, M315M, M328M, M332M, M364M, M365M, M371M, M379M
Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CO
Query on CO

A COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET
KCX
Query on KCX
A L-PEPTIDE LINKING C7 H14 N2 O4 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.162
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 96.46 α = 90.00
b = 145.94 β = 90.00
c = 79.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-04
  • Released Date: 2004-09-07
  • Deposition author(s): Hall, P.R., Zheng, R., Antony, L., Pusztai-Carey, M., Carey, P.R., Yee, V.C.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4