Crystal Structure of a new rexinoid bound to the RXRalpha ligand binding doamin in the RXRalpha/PPARgamma heterodimer DOI:10.2210/pdb1rdt/pdb

1RDT   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hormone/growth Factor Structure Weight: 65772.68 Molecule: Retinoic acid receptor RXR-alpha Polymer: 1 Type: protein Length: 242 Chains: A Fragment: ligand binding doamin Organism Homo sapiens Gene Names RXRA NR2B1 UniProtKB:   Protein Feature View | Search PDB | P19793     Molecule: LxxLL motif coactivator Polymer: 2 Type: protein Length: 25 Chains: B EC#: 2.3.1.48    Fragment: LxxLL peptide Gene Names NCOA1 BHLHE74 SRC1 UniProtKB:   Protein Feature View | Search PDB | Q15788     Molecule: Peroxisome proliferator activated receptor gamma Polymer: 3 Type: protein Length: 284 Chains: D Fragment: ligand binding doamin Organism Homo sapiens Gene Names PPARG NR1C3 UniProtKB:   Protein Feature View | Search PDB | P37231     Molecule: LxxLL motif coactivator Polymer: 4 Type: protein Length: 23 Chains: E EC#: 2.3.1.48    Fragment: LxxLL peptide Gene Names CREBBP CBP UniProtKB:   Protein Feature View | Search PDB | Q92793         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)   Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)   Polymer: 4 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1FM6  The 2.1A crystal structure of 9cis retinoic acid and rosiglitazone respectively bound to the RXRalpha / PPARgamma heterodimer coactivated with SRC1(2) peptides  1FM9  The 2.1A crystal structure of 9cis retinoic acid and GI262570 respectively bound to the RXRalpha / PPARgamma heterodimer coactivated with SRC1(2) peptides      Ligand Chemical Component Hide Identifier Formula Name Interactions 570 Search  Download  C34 H30 N2 O5 2-(2-BENZOYL-PHENYLAMINO)-3-{4-[2-(5-METHYL- 2-PHENYL-OXAZOL-4-YL)-ETHOXY]-PHENYL}-PROPIONIC ACID   Ligand Explorer L79 Search  Download  C25 H30 O3 (S)-(2E)-3[4-(5,5,8,8-TETRAMETHYL-5,6,7,8- TETRAHYDRO-2-NAPHTHALENYL)TETRAHYDRO-1-BENZOFURAN- 2-YL]-2-PROPENOIC ACID   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) 570 Search  Download  EC50: 0.34 - 6 nM (98 - 100) - data from BindingDB   IC50: 25 - 217 nM (100) - data from BindingDB   Ki: 1.1 nM (100) - data from BindingDB   N/A in BindingMoad L79 Search  Download  N/A in BindingDB Ki: 6 nM - data from BindingMOAD   Ki: 200 nM - data from PDBbind       External Domain Annotations Hide SCOP Classification v1.75: 2 Domains - data from SCOP   CATH Classification v3.4.0: 2 Domains - data from CATH   Pfam Classification: 3 Domains - data from Pfam   GO Terms: 46 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Haffner, C.D.,  Lenhard, J.M.,  Miller, A.B.,  McDougald, D.L.,  Dwornik, K.,  Ittoop, O.R.,  Gampe Jr., R.T.,  Xu, H.E.,  Blanchard, S.,  Montana, V.G. Deposition:   2003-11-06 Release:   2004-11-09 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data: N/A Resolution[Å]:   2.40 R-Value: 0.221 (work) R-Free: 0.259 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 49.69 α = 90.00  b = 54.58 β = 90.00  c = 211.70 γ = 90.00      Molecule of the Month Hide Vitamin D Receptor