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Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA
DOI:10.2210/pdb1r4r/pdb   NDB ID: PD0476
1R4R
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 32349.58
    Molecule: 5'-D(*TP*CP*AP*GP*AP*AP*CP*AP*TP*GP*AP*TP*GP*TP*TP*CP*TP*CP*A)-3'
    Polymer: 1 Type: dna Length: 19
    Chains: C
    Details: Idealized glucocorticoid response element IR3, top strand
    Molecule: 5'-D(*CP*TP*GP*AP*GP*AP*AP*CP*AP*TP*CP*AP*TP*GP*TP*TP*CP*TP*G)-3'
    Polymer: 2 Type: dna Length: 19
    Chains: D
    Details: Idealized glucocorticoid response element IR3, bottom strand
    Molecule: Glucocorticoid receptor
    Polymer: 3 Type: protein Length: 92
    Chains: A, B
    Fragment: DNA binding domain
    Organism Rattus norvegicus
    Gene Names Nr3c1 Grl
    UniProtKB:   Protein Feature View | Search PDB | P06536  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Norway rat Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1GLU  Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA 
    1R4O  Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0476
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Luisi, B.F.,  Xu, W.X.,  Otwinowski, Z.,  Freedman, L.P.,  Yamamoto, K.R.,  Sigler, P.B.

    Deposition:   2003-10-07
    Release:   2003-10-28
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   3.00
    R-Value: n/a
    R-Free: n/a
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 38.50 α = 90.00 
    b = 99.70 β = 90.00 
    c = 121.90 γ = 90.00