1R4R

Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA

Structural Biology Knowledgebase: 1R4R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Work:

Literature

Macromolecules
Sequence Display for 1R4R

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 32349.58


Macromolecule Entities
Molecule Chains Length Organism Details
Glucocorticoid receptor A, B 92 Rattus norvegicus Fragment: DNA binding domain
Gene Name(s): Nr3c1 Grl
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*CP*AP*GP*AP*AP*CP*AP*TP*GP*AP*TP*GP*TP*TP*CP*TP*CP*A)-3' C 19 synthetic Idealized glucocorticoid response element IR3, top strand
5'-D(*CP*TP*GP*AP*GP*AP*AP*CP*AP*TP*CP*AP*TP*GP*TP*TP*CP*TP*G)-3' D 19 synthetic Idealized glucocorticoid response element IR3, bottom strand

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed:
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 38.50 α = 90.00
b = 99.70 β = 90.00
c = 121.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-10-07
  • Released Date: 2003-10-28
  • Deposition author(s): Luisi, B.F., Xu, W.X., Otwinowski, Z., Freedman, L.P., Yamamoto, K.R., Sigler, P.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4