POP-OUT | CLOSE
APPBP1-UBA3-NEDD8, an E1-ubiquitin-like protein complex with ATP
1R4N
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Cell Cycle
    Structure Weight: 469486.49
    Molecule: amyloid beta precursor protein-binding protein 1
    Polymer: 1 Type: protein Length: 529
    Chains: A, C, E, G
    Organism Homo sapiens
    Gene Names NAE1 APPBP1 HPP1
    UniProtKB:   Protein Feature View | Search PDB | Q13564  
    Molecule: ubiquitin-activating enzyme E1C
    Polymer: 2 Type: protein Length: 431
    Chains: B, D, F, H
    EC#: 6.3.2   
    Mutation: C216A
    Organism Homo sapiens
    Gene Names UBA3 UBE1C
    UniProtKB:   Protein Feature View | Search PDB | Q8TBC4  
    Molecule: Ubiquitin-like protein NEDD8
    Polymer: 3 Type: protein Length: 76
    Chains: I, J, K, L
    Organism Homo sapiens
    Gene Name NEDD8
    UniProtKB:   Protein Feature View | Search PDB | Q15843  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1R4M   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ATP
    Search 
    Download 
    ATP C10 H16 N5 O13 P3
    ADENOSINE-5'-TRIPHOSPHATE
    ZN
    Search 
    Download 
    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Walden, H.,  Podgorski, M.S.,  Holton, J.M,  Schulman, B.A.

    Deposition:   2003-10-07
    Release:   2003-12-23
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   3.60
    R-Value: 0.269 (obs.)
    R-Free: 0.290
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 135.00 α = 90.00 
    b = 197.90 β = 90.00 
    c = 211.00 γ = 90.00