1QWZ

Crystal structure of Sortase B from S. aureus complexed with MTSET


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 1QWZ

Classification: HYDROLASE

Total Structure Weight: 28371.42

Macromolecule Entities
Molecule Chains Length Organism Details
NPQTN specific sortase B A 235 Staphylococcus aureus Gene Name(s): srtB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ETM
Query on ETM

A 2-(TRIMETHYLAMMONIUM)ETHYL THIOL
C5 H14 N S
VFUGTBZQGUVGEX-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.183
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 73.48 α = 90.00
b = 61.57 β = 91.58
c = 45.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-09-03
  • Released Date: 2004-04-06
  • Deposition author(s): Zong, Y., Mazmanian, S.K., Schneewind, O., Narayana, S.V.

Revision History

  • Version 1_0: 2004-04-06

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance