1QBK

STRUCTURE OF THE KARYOPHERIN BETA2-RAN GPPNHP NUCLEAR TRANSPORT COMPLEX

Structural Biology Knowledgebase: 1QBK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.315
  • R-Value Work: 0.267

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1QBK

Classification: NUCLEAR TRANSPORT PROTEIN COMPLEX

Total Structure Weight: 127666.50

Macromolecule Entities
Molecule Chains Length Organism Details
KARYOPHERIN BETA2 B 890 Homo sapiens Fragment: FULL-LENGTH PROTEIN
Mutation: I217T, M175M, M210M, M237R, M247M, M254M, M261M, M308M, M429M, M432M, M482M, M564M, M566M, M575M, M624M, M641M, M672M, M680M, M710M, M739M, M743M, M749M, M789M, M820M, M852M
Gene Name(s): TNPO1 Gene View KPNB2 MIP1 TRN
RAN C 216 Homo sapiens Fragment: FULL-LENGTH PROTEIN
Mutation: S129R, M89M, M179M, M189M
Gene Name(s): RAN Gene View ARA24 OK/SW-cl.81

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GNP
Query on GNP

C PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
B, C L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.315
  • R-Value Work: 0.267
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 133.11 α = 90.00
b = 133.11 β = 90.00
c = 138.41 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-04-23
  • Released Date: 1999-06-01
  • Deposition author(s): Chook, Y.M., Blobel, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4