POP-OUT | CLOSE
Crystal Structure of the Wild Type Ribosome from E. Coli, 50S Subunit of 70S Ribosome. THIS FILE, 1PNY, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT IS IN THE PDB FILE 1PNX.
DOI:10.2210/pdb1pny/pdb   NDB ID: RR0075
1PNY
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
1PNX   1PNY  
  Download All Files   

 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1372127.19
    Molecule: 23S RIBOSOMAL RNA
    Polymer: 1 Type: rna Length: 2887
    Chains: 0
    Organism Escherichia coli
    Molecule: 5S RIBOSOMAL RNA
    Polymer: 2 Type: rna Length: 118
    Chains: 9
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L2
    Polymer: 3 Type: protein Length: 270
    Chains: A
    Organism Escherichia coli
    Gene Names rplB DR_0314
    UniProtKB:   Protein Feature View | Search PDB | Q9RXJ9  
    Molecule: 50S ribosomal protein L3
    Polymer: 4 Type: protein Length: 205
    Chains: B
    Organism Escherichia coli
    Gene Names rplC DR_0311
    UniProtKB:   Protein Feature View | Search PDB | Q9RXK2  
    Molecule: 50S ribosomal protein L4
    Polymer: 5 Type: protein Length: 197
    Chains: C
    Organism Escherichia coli
    Gene Names rplD DR_0312
    UniProtKB:   Protein Feature View | Search PDB | Q9RXK1  
    Molecule: 50S ribosomal protein L5
    Polymer: 6 Type: protein Length: 178
    Chains: D
    Organism Escherichia coli
    Gene Names rplE DR_0323
    UniProtKB:   Protein Feature View | Search PDB | Q9RXJ0  
    Molecule: 50S ribosomal protein L6
    Polymer: 7 Type: protein Length: 177
    Chains: E
    Organism Escherichia coli
    Gene Names rplF DR_2111
    UniProtKB:   Protein Feature View | Search PDB | Q9RSL3  
    Molecule: 50S ribosomal protein L9
    Polymer: 8 Type: protein Length: 52
    Chains: F
    Organism Escherichia coli
    Gene Names rplI DR_0102
    UniProtKB:   Protein Feature View | Search PDB | Q9RY49  
    Molecule: 50S ribosomal protein L11
    Polymer: 9 Type: protein Length: 143
    Chains: G
    Organism Escherichia coli
    Gene Names rplK DR_2046
    UniProtKB:   Protein Feature View | Search PDB | Q9RSS7  
    Molecule: 50S ribosomal protein L13
    Polymer: 10 Type: protein Length: 143
    Chains: H
    Organism Escherichia coli
    Gene Names rplM DR_0174
    UniProtKB:   Protein Feature View | Search PDB | Q9RXY1  
    Molecule: 50S ribosomal protein L14
    Polymer: 11 Type: protein Length: 132
    Chains: I
    Organism Escherichia coli
    Gene Names rplN DR_0321
    UniProtKB:   Protein Feature View | Search PDB | Q9RXJ2  
    Molecule: 50S ribosomal protein L15
    Polymer: 12 Type: protein Length: 141
    Chains: J
    Organism Escherichia coli
    Gene Names rplO DR_2115
    UniProtKB:   Protein Feature View | Search PDB | Q9RSK9  
    Molecule: 50S ribosomal protein L16
    Polymer: 13 Type: protein Length: 124
    Chains: K
    Organism Escherichia coli
    Gene Names rplP DR_0318
    UniProtKB:   Protein Feature View | Search PDB | Q9RXJ5  
    Molecule: 50S ribosomal protein L17
    Polymer: 14 Type: protein Length: 114
    Chains: L
    Organism Escherichia coli
    Gene Names rplQ DR_2129
    UniProtKB:   Protein Feature View | Search PDB | Q9RSJ5  
    Molecule: 50S ribosomal protein L18
    Polymer: 15 Type: protein Length: 111
    Chains: M
    Organism Escherichia coli
    Gene Names rplR DR_2112
    UniProtKB:   Protein Feature View | Search PDB | Q9RSL2  
    Molecule: 50S ribosomal protein L19
    Polymer: 16 Type: protein Length: 125
    Chains: N
    Organism Escherichia coli
    Gene Names rplS DR_0755
    UniProtKB:   Protein Feature View | Search PDB | Q9RWB4  
    Molecule: 50S ribosomal protein L20
    Polymer: 17 Type: protein Length: 117
    Chains: O
    Organism Escherichia coli
    Gene Names rplT DR_2004
    UniProtKB:   Protein Feature View | Search PDB | Q9RSW7  
    Molecule: 50S ribosomal protein L21
    Polymer: 18 Type: protein Length: 100
    Chains: P
    Organism Escherichia coli
    Gene Names rplU DR_0086
    UniProtKB:   Protein Feature View | Search PDB | Q9RY64  
    Molecule: 50S ribosomal protein L22
    Polymer: 19 Type: protein Length: 130
    Chains: Q
    Organism Escherichia coli
    Gene Names rplV DR_0316
    UniProtKB:   Protein Feature View | Search PDB | Q9RXJ7  
    Molecule: 50S ribosomal protein L23
    Polymer: 20 Type: protein Length: 93
    Chains: R
    Organism Escherichia coli
    Gene Names rplW DR_0313
    UniProtKB:   Protein Feature View | Search PDB | Q9RXK0  
    Molecule: 50S ribosomal protein L24
    Polymer: 21 Type: protein Length: 113
    Chains: S
    Organism Escherichia coli
    Gene Names rplX DR_0322
    UniProtKB:   Protein Feature View | Search PDB | Q9RXJ1  
    Molecule: general stress protein Ctc
    Polymer: 22 Type: protein Length: 173
    Chains: T
    Organism Escherichia coli
    Gene Names rplY ctc DR_0427
    UniProtKB:   Protein Feature View | Search PDB | Q9RX88  
    Molecule: 50S ribosomal protein L27
    Polymer: 23 Type: protein Length: 86
    Chains: U
    Organism Escherichia coli
    Gene Names rpmA DR_0085
    UniProtKB:   Protein Feature View | Search PDB | Q9RY65  
    Molecule: 50S RIBOSOMAL PROTEIN L28
    Polymer: 24 Type: protein Length: 16
    Chains: V
    Organism Escherichia coli
    Molecule: 50S ribosomal protein L29
    Polymer: 25 Type: protein Length: 65
    Chains: W
    Organism Escherichia coli
    Gene Names rpmC DR_0319
    UniProtKB:   Protein Feature View | Search PDB | Q9RXJ4  
    Molecule: 50S ribosomal protein L30
    Polymer: 26 Type: protein Length: 55
    Chains: X
    Organism Escherichia coli
    Gene Names rpmD DR_2114
    UniProtKB:   Protein Feature View | Search PDB | Q9RSL0  
    Molecule: 50S ribosomal protein L31
    Polymer: 27 Type: protein Length: 73
    Chains: Y
    Organism Escherichia coli
    Gene Names rpmE DR_0825
    UniProtKB:   Protein Feature View | Search PDB | Q9RW44  
    Molecule: 50S ribosomal protein L32
    Polymer: 28 Type: protein Length: 58
    Chains: Z
    Organism Escherichia coli
    Gene Names rpmF DR_2366
    UniProtKB:   Protein Feature View | Search PDB | P49228  
    Molecule: 50S ribosomal protein L33
    Polymer: 29 Type: protein Length: 53
    Chains: 1
    Organism Escherichia coli
    Gene Names rpmG DR_2049
    UniProtKB:   Protein Feature View | Search PDB | Q9RSS4  
    Molecule: 50S ribosomal protein L34
    Polymer: 30 Type: protein Length: 46
    Chains: 2
    Organism Escherichia coli
    Gene Names rpmH DR_2152
    UniProtKB:   Protein Feature View | Search PDB | Q9RSH2  
    Molecule: 50S ribosomal protein L35
    Polymer: 31 Type: protein Length: 63
    Chains: 3
    Organism Escherichia coli
    Gene Names rpmI DR_2005
    UniProtKB:   Protein Feature View | Search PDB | Q9RSW6  
    Molecule: 50S ribosomal protein L36
    Polymer: 32 Type: protein Length: 35
    Chains: 4
    Organism Escherichia coli
    Gene Names rpmJ DR_2124
    UniProtKB:   Protein Feature View | Search PDB | Q9RSK0  
    Molecule: 50S ribosomal protein L1P
    Polymer: 33 Type: protein Length: 217
    Chains: 5
    Organism Escherichia coli
    Gene Names rpl1 Saci_1458
    UniProtKB:   Protein Feature View | Search PDB | P35024  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 4
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 5
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 6
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 7
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 8
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 9
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 10
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 11
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 12
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 13
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 14
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 15
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 16
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 17
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 18
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 19
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 20
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 21
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 22
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 23
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 24
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 25
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 26
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 27
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 28
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 29
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 30
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 31
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 32
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 33
    Scientific Name: Escherichia coli   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1PNS  Crystal structure of a streptomycin dependent ribosome from E. coli, 30S subunit of 70S ribosome 
    1PNU  Crystal structure of a streptomycin dependent ribosome from E. coli, 50S subunit of 70S ribosome 
    1PNX  Crystal structure of the wild type ribosome from E. coli, 30S subunit of 70S ribosome 
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
    Search 
    MSE C5 H11 N O2 Se MET lPeptideLinking
    UNK
    Search 
    UNK C4 H9 N O2 lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: RR0075
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (1PNX and 1PNY)