Crystal Structure of the Wild Type Ribosome from E. Coli, 50S Subunit of 70S Ribosome. THIS FILE, 1PNY, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT IS IN THE PDB FILE 1PNX. DOI:10.2210/pdb1pny/pdb   NDB ID: RR0075

1PNY   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 1PNX   1PNY     Download All Files      Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 1372127.19 Molecule: 23S RIBOSOMAL RNA Polymer: 1 Type: rna Length: 2887 Chains: 0 Organism Escherichia coli Molecule: 5S RIBOSOMAL RNA Polymer: 2 Type: rna Length: 118 Chains: 9 Organism Escherichia coli Molecule: 50S ribosomal protein L2 Polymer: 3 Type: protein Length: 270 Chains: A Organism Escherichia coli Molecule: 50S ribosomal protein L3 Polymer: 4 Type: protein Length: 205 Chains: B Organism Escherichia coli Gene Names rplC DR_0311 UniProtKB:   Protein Feature View | Search PDB | Q9RXK2     Molecule: 50S ribosomal protein L4 Polymer: 5 Type: protein Length: 197 Chains: C Organism Escherichia coli Gene Names rplD DR_0312 UniProtKB:   Protein Feature View | Search PDB | Q9RXK1     Molecule: 50S ribosomal protein L5 Polymer: 6 Type: protein Length: 178 Chains: D Organism Escherichia coli Gene Names rplE DR_0323 UniProtKB:   Protein Feature View | Search PDB | Q9RXJ0     Molecule: 50S ribosomal protein L6 Polymer: 7 Type: protein Length: 177 Chains: E Organism Escherichia coli Gene Names rplF DR_2111 UniProtKB:   Protein Feature View | Search PDB | Q9RSL3     Molecule: 50S ribosomal protein L9 Polymer: 8 Type: protein Length: 52 Chains: F Organism Escherichia coli Gene Names rplI DR_0102 UniProtKB:   Protein Feature View | Search PDB | Q9RY49     Molecule: 50S ribosomal protein L11 Polymer: 9 Type: protein Length: 143 Chains: G Organism Escherichia coli Gene Names rplK DR_2046 UniProtKB:   Protein Feature View | Search PDB | Q9RSS7     Molecule: 50S ribosomal protein L13 Polymer: 10 Type: protein Length: 143 Chains: H Organism Escherichia coli Gene Names rplM DR_0174 UniProtKB:   Protein Feature View | Search PDB | Q9RXY1     Molecule: 50S ribosomal protein L14 Polymer: 11 Type: protein Length: 132 Chains: I Organism Escherichia coli Gene Names rplN DR_0321 UniProtKB:   Protein Feature View | Search PDB | Q9RXJ2     Molecule: 50S ribosomal protein L15 Polymer: 12 Type: protein Length: 141 Chains: J Organism Escherichia coli Gene Names rplO DR_2115 UniProtKB:   Protein Feature View | Search PDB | Q9RSK9     Molecule: 50S ribosomal protein L16 Polymer: 13 Type: protein Length: 124 Chains: K Organism Escherichia coli Gene Names rplP DR_0318 UniProtKB:   Protein Feature View | Search PDB | Q9RXJ5     Molecule: 50S ribosomal protein L17 Polymer: 14 Type: protein Length: 114 Chains: L Organism Escherichia coli Gene Names rplQ DR_2129 UniProtKB:   Protein Feature View | Search PDB | Q9RSJ5     Molecule: 50S ribosomal protein L18 Polymer: 15 Type: protein Length: 111 Chains: M Organism Escherichia coli Gene Names rplR DR_2112 UniProtKB:   Protein Feature View | Search PDB | Q9RSL2     Molecule: 50S ribosomal protein L19 Polymer: 16 Type: protein Length: 125 Chains: N Organism Escherichia coli Gene Names rplS DR_0755 UniProtKB:   Protein Feature View | Search PDB | Q9RWB4     Molecule: 50S ribosomal protein L20 Polymer: 17 Type: protein Length: 117 Chains: O Organism Escherichia coli Gene Names rplT DR_2004 UniProtKB:   Protein Feature View | Search PDB | Q9RSW7     Molecule: 50S ribosomal protein L21 Polymer: 18 Type: protein Length: 100 Chains: P Organism Escherichia coli Gene Names rplU DR_0086 UniProtKB:   Protein Feature View | Search PDB | Q9RY64     Molecule: 50S ribosomal protein L22 Polymer: 19 Type: protein Length: 130 Chains: Q Organism Escherichia coli Gene Names rplV DR_0316 UniProtKB:   Protein Feature View | Search PDB | Q9RXJ7     Molecule: 50S ribosomal protein L23 Polymer: 20 Type: protein Length: 93 Chains: R Organism Escherichia coli Gene Names rplW DR_0313 UniProtKB:   Protein Feature View | Search PDB | Q9RXK0     Molecule: 50S ribosomal protein L24 Polymer: 21 Type: protein Length: 113 Chains: S Organism Escherichia coli Gene Names rplX DR_0322 UniProtKB:   Protein Feature View | Search PDB | Q9RXJ1     Molecule: general stress protein Ctc Polymer: 22 Type: protein Length: 173 Chains: T Organism Escherichia coli Gene Names rplY ctc DR_0427 UniProtKB:   Protein Feature View | Search PDB | Q9RX88     Molecule: 50S ribosomal protein L27 Polymer: 23 Type: protein Length: 86 Chains: U Organism Escherichia coli Gene Names rpmA DR_0085 UniProtKB:   Protein Feature View | Search PDB | Q9RY65     Molecule: 50S RIBOSOMAL PROTEIN L28 Polymer: 24 Type: protein Length: 16 Chains: V Organism Escherichia coli Molecule: 50S ribosomal protein L29 Polymer: 25 Type: protein Length: 65 Chains: W Organism Escherichia coli Gene Names rpmC DR_0319 UniProtKB:   Protein Feature View | Search PDB | Q9RXJ4     Molecule: 50S ribosomal protein L30 Polymer: 26 Type: protein Length: 55 Chains: X Organism Escherichia coli Gene Names rpmD DR_2114 UniProtKB:   Protein Feature View | Search PDB | Q9RSL0     Molecule: 50S ribosomal protein L31 Polymer: 27 Type: protein Length: 73 Chains: Y Organism Escherichia coli Gene Names rpmE DR_0825 UniProtKB:   Protein Feature View | Search PDB | Q9RW44     Molecule: 50S ribosomal protein L32 Polymer: 28 Type: protein Length: 58 Chains: Z Organism Escherichia coli Gene Names rpmF DR_2366 UniProtKB:   Protein Feature View | Search PDB | P49228     Molecule: 50S ribosomal protein L33 Polymer: 29 Type: protein Length: 53 Chains: 1 Organism Escherichia coli Gene Names rpmG DR_2049 UniProtKB:   Protein Feature View | Search PDB | Q9RSS4     Molecule: 50S ribosomal protein L34 Polymer: 30 Type: protein Length: 46 Chains: 2 Organism Escherichia coli Gene Names rpmH DR_2152 UniProtKB:   Protein Feature View | Search PDB | Q9RSH2     Molecule: 50S ribosomal protein L35 Polymer: 31 Type: protein Length: 63 Chains: 3 Organism Escherichia coli Gene Names rpmI DR_2005 UniProtKB:   Protein Feature View | Search PDB | Q9RSW6     Molecule: 50S ribosomal protein L36 Polymer: 32 Type: protein Length: 35 Chains: 4 Organism Escherichia coli Gene Names rpmJ DR_2124 UniProtKB:   Protein Feature View | Search PDB | Q9RSK0     Molecule: 50S ribosomal protein L1P Polymer: 33 Type: protein Length: 217 Chains: 5 Organism Escherichia coli Gene Names rpl1p Saci_1458 UniProtKB:   Protein Feature View | Search PDB | P35024         Source Hide Polymer: 1 Scientific Name: Escherichia coli   Taxonomy     Polymer: 2 Scientific Name: Escherichia coli   Taxonomy     Polymer: 3 Scientific Name: Escherichia coli   Taxonomy     Polymer: 4 Scientific Name: Escherichia coli   Taxonomy     Polymer: 5 Scientific Name: Escherichia coli   Taxonomy     Polymer: 6 Scientific Name: Escherichia coli   Taxonomy     Polymer: 7 Scientific Name: Escherichia coli   Taxonomy     Polymer: 8 Scientific Name: Escherichia coli   Taxonomy     Polymer: 9 Scientific Name: Escherichia coli   Taxonomy     Polymer: 10 Scientific Name: Escherichia coli   Taxonomy     Polymer: 11 Scientific Name: Escherichia coli   Taxonomy     Polymer: 12 Scientific Name: Escherichia coli   Taxonomy     Polymer: 13 Scientific Name: Escherichia coli   Taxonomy     Polymer: 14 Scientific Name: Escherichia coli   Taxonomy     Polymer: 15 Scientific Name: Escherichia coli   Taxonomy     Polymer: 16 Scientific Name: Escherichia coli   Taxonomy     Polymer: 17 Scientific Name: Escherichia coli   Taxonomy     Polymer: 18 Scientific Name: Escherichia coli   Taxonomy     Polymer: 19 Scientific Name: Escherichia coli   Taxonomy     Polymer: 20 Scientific Name: Escherichia coli   Taxonomy     Polymer: 21 Scientific Name: Escherichia coli   Taxonomy     Polymer: 22 Scientific Name: Escherichia coli   Taxonomy     Polymer: 23 Scientific Name: Escherichia coli   Taxonomy     Polymer: 24 Scientific Name: Escherichia coli   Taxonomy     Polymer: 25 Scientific Name: Escherichia coli   Taxonomy     Polymer: 26 Scientific Name: Escherichia coli   Taxonomy     Polymer: 27 Scientific Name: Escherichia coli   Taxonomy     Polymer: 28 Scientific Name: Escherichia coli   Taxonomy     Polymer: 29 Scientific Name: Escherichia coli   Taxonomy     Polymer: 30 Scientific Name: Escherichia coli   Taxonomy     Polymer: 31 Scientific Name: Escherichia coli   Taxonomy     Polymer: 32 Scientific Name: Escherichia coli   Taxonomy     Polymer: 33 Scientific Name: Escherichia coli   Taxonomy         Related PDB Entries Hide Identifier Details 1PNS  Crystal structure of a streptomycin dependent ribosome from E. coli, 30S subunit of 70S ribosome  1PNU  Crystal structure of a streptomycin dependent ribosome from E. coli, 50S subunit of 70S ribosome  1PNX  Crystal structure of the wild type ribosome from E. coli, 30S subunit of 70S ribosome      Modified Residues Hide Identifier Formula Parent Type MSE Search  C5 H11 N O2 Se MET lPeptideLinking UNK Search  C4 H9 N O2 lPeptideLinking     External Domain Annotations Hide SCOP Classification v1.75: 31 Domains - data from SCOP   Pfam Classification: 34 Domains - data from Pfam   GO Terms: 212 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: RR0075     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Composite of PDB entries (1PNX and 1PNY)         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Vila-Sanjurjo, A.,  Ridgeway, W.K.,  Seymaner, V.,  Zhang, W.,  Santoso, S.,  Yu, K.,  Cate, J.H.D. Deposition:   2003-06-13 Release:   2003-07-15 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data: N/A Resolution[Å]:   9.50 R-Value: 0.389 (work) R-Free: 0.407 Space Group: I 4 2 2 Unit Cell:   Length [Å] Angles [°] a = 683.89 α = 90.00  b = 683.89 β = 90.00  c = 386.72 γ = 90.00      Molecule of the Month Hide Ribosome Transfer-Messenger RNA