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Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome
1P87
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
1P86   1P87  
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The complete entry has been assigned PDB ID 4V48 and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v48.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v48.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 779193.25
    Molecule: 16S RIBOSOMAL RNA
    Polymer: 1 Type: rna Length: 1543
    Chains: A
    Organism: Escherichia coli
    Molecule: 30S RIBOSOMAL PROTEIN S2
    Polymer: 2 Type: protein Length: 240
    Chains: B
    Organism: Escherichia coli
    Gene Names: rpsB b0169 JW0164
    UniProtKB: Protein Feature View | Search PDB | P0A7V0  
    Molecule: 30S RIBOSOMAL PROTEIN S3
    Polymer: 3 Type: protein Length: 232
    Chains: C
    Organism: Escherichia coli
    Gene Names: rpsC b3314 JW3276
    UniProtKB: Protein Feature View | Search PDB | P0A7V3  
    Molecule: 30S RIBOSOMAL PROTEIN S4
    Polymer: 4 Type: protein Length: 205
    Chains: D
    Organism: Escherichia coli
    Gene Names: rpsD ramA b3296 JW3258
    UniProtKB: Protein Feature View | Search PDB | P0A7V8  
    Molecule: 30S RIBOSOMAL PROTEIN S5
    Polymer: 5 Type: protein Length: 166
    Chains: E
    Organism: Escherichia coli
    Gene Names: rpsE spc b3303 JW3265
    UniProtKB: Protein Feature View | Search PDB | P0A7W1  
    Molecule: 30S RIBOSOMAL PROTEIN S6
    Polymer: 6 Type: protein Length: 135
    Chains: F
    Organism: Escherichia coli
    Gene Names: rpsF b4200 JW4158
    UniProtKB: Protein Feature View | Search PDB | P02358  
    Molecule: 30S RIBOSOMAL PROTEIN S7
    Polymer: 7 Type: protein Length: 178
    Chains: G
    Organism: Escherichia coli
    Gene Names: rpsG b3341 JW3303
    UniProtKB: Protein Feature View | Search PDB | P02359  
    Molecule: 30S RIBOSOMAL PROTEIN S8
    Polymer: 8 Type: protein Length: 129
    Chains: H
    Organism: Escherichia coli
    Gene Names: rpsH b3306 JW3268
    UniProtKB: Protein Feature View | Search PDB | P0A7W7  
    Molecule: 30S RIBOSOMAL PROTEIN S9
    Polymer: 9 Type: protein Length: 129
    Chains: I
    Organism: Escherichia coli
    Gene Names: rpsI b3230 JW3199
    UniProtKB: Protein Feature View | Search PDB | P0A7X3  
    Molecule: 30S RIBOSOMAL PROTEIN S10
    Polymer: 10 Type: protein Length: 103
    Chains: J
    Organism: Escherichia coli
    Gene Names: rpsJ nusE b3321 JW3283
    UniProtKB: Protein Feature View | Search PDB | P0A7R5  
    Molecule: 30S RIBOSOMAL PROTEIN S11
    Polymer: 11 Type: protein Length: 128
    Chains: K
    Organism: Escherichia coli
    Gene Names: rpsK b3297 JW3259
    UniProtKB: Protein Feature View | Search PDB | P0A7R9  
    Molecule: 30S RIBOSOMAL PROTEIN S12
    Polymer: 12 Type: protein Length: 123
    Chains: L
    Organism: Escherichia coli
    Gene Names: rpsL strA b3342 JW3304
    UniProtKB: Protein Feature View | Search PDB | P0A7S3  
    Molecule: 30S RIBOSOMAL PROTEIN S13
    Polymer: 13 Type: protein Length: 117
    Chains: M
    Organism: Escherichia coli
    Gene Names: rpsM b3298 JW3260
    UniProtKB: Protein Feature View | Search PDB | P0A7S9  
    Molecule: 30S RIBOSOMAL PROTEIN S14
    Polymer: 14 Type: protein Length: 100
    Chains: N
    Organism: Escherichia coli
    Gene Names: rpsN b3307 JW3269
    UniProtKB: Protein Feature View | Search PDB | P0AG59  
    Molecule: 30S RIBOSOMAL PROTEIN S15
    Polymer: 15 Type: protein Length: 88
    Chains: O
    Organism: Escherichia coli
    Gene Names: rpsO secC b3165 JW3134
    UniProtKB: Protein Feature View | Search PDB | P0ADZ4  
    Molecule: 30S RIBOSOMAL PROTEIN S16
    Polymer: 16 Type: protein Length: 82
    Chains: P
    Organism: Escherichia coli
    Gene Names: rpsP b2609 JW2590
    UniProtKB: Protein Feature View | Search PDB | P0A7T3  
    Molecule: 30S RIBOSOMAL PROTEIN S17
    Polymer: 17 Type: protein Length: 83
    Chains: Q
    Organism: Escherichia coli
    Gene Names: rpsQ neaA b3311 JW3273
    UniProtKB: Protein Feature View | Search PDB | P0AG63  
    Molecule: 30S RIBOSOMAL PROTEIN S18
    Polymer: 18 Type: protein Length: 74
    Chains: R
    Organism: Escherichia coli
    Gene Names: rpsR b4202 JW4160
    UniProtKB: Protein Feature View | Search PDB | P0A7T7  
    Molecule: 30S RIBOSOMAL PROTEIN S19
    Polymer: 19 Type: protein Length: 91
    Chains: S
    Organism: Escherichia coli
    Gene Names: rpsS b3316 JW3278
    UniProtKB: Protein Feature View | Search PDB | P0A7U3  
    Molecule: 30S RIBOSOMAL PROTEIN S20
    Polymer: 20 Type: protein Length: 86
    Chains: T
    Organism: Escherichia coli
    Gene Names: rpsT b0023 JW0022
    UniProtKB: Protein Feature View | Search PDB | P0A7U7  
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 4
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 5
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 6
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 7
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 8
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 9
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 10
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 11
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 12
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 13
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 14
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 15
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 16
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 17
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 18
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 19
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 20
    Scientific Name: Escherichia coli   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1GIX  Crystal Structure Of The Ribosome At 5.5 A Resolution. Contains The 30S Ribosome Subunit, Three tRNA, and mRNA Molecules 
    1GIY  Crystal Structure Of The Ribosome At 5.5 A Resolution. Contains The 50S Ribosome Subunit 
    1IBL  Structure Of The Thermus Thermophilus 30S Ribosomal Subunit In Complex With The Antibiotic Paromomycin 
    1JJ2  Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution 
    1LNR  Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans 
    1M5G  ALL-ATOM HOMOLOGY STRUCTURE OF THE ESCHERICHIA COLI 30S RIBOSOMAL SUBUNIT 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (1P86 and 1P87)