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INTRAMOLECULAR DNA TRIPLEX WITH 1-PROPYNYL DEOXYURIDINE IN THE THIRD STRAND, NMR, 10 STRUCTURES
 
 
DOI:10.2210/pdb1p3x/pdb   NDB ID: 1P3X
1P3X
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 5202.54
     
    Molecule:DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*A)-3')
    Polymer:1Type:polydeoxyribonucleotideLength:8
    Chains:A
    Other Details:HEXAKIS (ETHYLENE GLYCOL) LINKERS BETWEEN A 8 AND T 9 AND BETWEEN T 16 AND T 17. C 18, C 20, AND C 22 ARE PROTONATED
    Molecule:DNA (5'-D(*TP*TP*CP*TP*CP*TP*CP*T)-3')
    Polymer:2Type:polydeoxyribonucleotideLength:8
    Chains:B
    Other Details:HEXAKIS (ETHYLENE GLYCOL) LINKERS BETWEEN A 8 AND T 9 AND BETWEEN T 16 AND T 17. C 18, C 20, AND C 22 ARE PROTONATED
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    DC     2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE C9 H14 N3 O7 P 3DLigand Explorer Link out to Ligand Expos:DC Link out to SuperLigands:DC Link out to SuperHapten:DC
    DCM     2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE C9 H14 N3 O7 P 3DLigand Explorer Link out to Ligand Expos:DCM Link out to SuperLigands:DCM Link out to SuperHapten:DCM
    PDU     5(1-PROPYNYL)-2'-DEOXYURIDINE-5-MONOPHOSPHATE C12 H19 N2 O8 P 3DLigand Explorer Link out to Ligand Expos:PDU Link out to SuperLigands:PDU Link out to SuperHapten:PDU
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    PDU 5(1-PROPYNYL)-2'-DEOXYURIDINE-5-MONOPHOSPHATE (parent: DU)(type: dnaLinking) C12 H19 N2 O8 P Link out to Ligand Expos:PDU Link out to SuperLigands:PDU Link out to SuperHapten:PDU 2D
    DC 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE(type: dnaLinking) C9 H14 N3 O7 P Link out to Ligand Expos:DC Link out to SuperLigands:DC Link out to SuperHapten:DC 2D
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Phipps, A.K.,   Tarkoy, M.,   Schultze, P.,   Feigon, J.

    Deposition:   1998-02-05
    Release:   1998-05-06
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   SOLUTION NMR
    Experimental Data:   N/A
    NMR Ensemble
    Conformers Calculated:     30
    Conformers Submitted:     10
    Selection Criteria: LOWEST OVERALL ENERGY
    NMR Refine
    Method: SOLUTION NMR