1OS5

Crystal structure of HCV NS5B RNA polymerase complexed with a novel non-competitive inhibitor.

Structural Biology Knowledgebase: 1OS5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1OS5

Classification: TRANSFERASE

Total Structure Weight: 64658.71

Macromolecule Entities
Molecule Chains Length Organism Details
Hepatitis C virus NS5B RNA polymerase A 576 Hepatitis c virus Mutation: L47Q, F101Y, K114R
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NH1
Query on NH1

A 3-(4-AMINO-2-TERT-BUTYL-5-METHYL-PHENYLSULFANYL)- 6-CYCLOPENTYL-4-HYDROXY-6-[2-(4-HYDROXY-PHENYL)- ETHYL]-5,6-DIHYDRO-PYRAN-2-ONE
C29 H37 N O4 S
ZEBFKFGJWHOOST-LJAQVGFWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NH1 N/A in BindingDB
Kd: 140 nM  BindingMOAD
Kd: 140 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.207
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 83.00 α = 90.00
b = 83.00 β = 90.00
c = 180.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-18
  • Released Date: 2004-03-18
  • Deposition author(s): Love, R.A., Parge, H.E., Yu, X., Hickey, M.J., Diehl, W., Gao, J., Wriggers, H., Ekker, A., Wang, L., Thomson, J.A., Dragovich, P.S., Fuhrman, S.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name