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STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH UCN-01
1OKZ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 37014.39
    Molecule: 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1
    Polymer: 1 Type: protein Length: 310
    Chains: A
    EC#: 2.7.11.1   
    Fragment: KINASE DOMAIN, RESIDUES 51-360
    Details: PDB RESIDUES ARE NUMBERED 51-360
    Organism Homo sapiens
    Gene Names PDPK1 PDK1
    UniProtKB:   Protein Feature View | Search PDB | O15530  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Spodoptera frugiperda  
     
  •   Related PDB Entries Hide
    Identifier Details
    1H1W  HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PDK1 CATALYTIC DOMAIN 
    1OKY  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE 
    1UU3  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH LY333531 
    1UU7  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-2 
    1UU8  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-1 
    1UU9  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-3 
    1UVR  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-8 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
    SO4
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    SO4 O4 S
    SULFATE ION
    UCN
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    UCN C28 H26 N4 O4
    7-HYDROXYSTAUROSPORINE
    UCN:1OKZ
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    UCN
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    UCN
    IC50: 5 - 6 nM (100) - data from BindingDB  
    N/Ain BindingMoad
    IC50: 5 nM - data from PDBbind  
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    SEP
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    SEP C3 H8 N O6 P SER lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Komander, D.,  Kular, G.S.,  Alessi, D.R.,  Van Aalten, D.M.F.

    Deposition:   2003-08-01
    Release:   2004-07-29
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.51
    R-Value: 0.190 (obs.)
    R-Free: 0.257
    Space Group: P 32 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 123.39 α = 90.00 
    b = 123.39 β = 90.00 
    c = 47.12 γ = 120.00