Crystal structure of the dengue 2 virus envelope protein in complex with n-octyl-beta-D-glucoside DOI:10.2210/pdb1oke/pdb

1OKE   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

ENTRY 1OKE SUPERSEDES 1OAM Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Viral Protein Structure Weight: 90132.14 Molecule: MAJOR ENVELOPE PROTEIN E Polymer: 1 Type: protein Length: 394 Chains: A, B Fragment: SOLUBLE ECTODOMAIN, RESIDUES 281-674 Organism Dengue virus 2 UniProtKB:   Protein Feature View | Search PDB | P12823         Source Hide Polymer: 1 Scientific Name: Dengue virus type 2   Taxonomy   Expression System: Drosophila melanogaster   Polymer: 3 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1L9K  DENGUE METHYLTRANSFERASE  1OAM  CRYSTAL STRUCTURE OF THE DENGUE 2 VIRUS ENVELOPE PROTEIN IN COMPLEX WITH N-OCTYL- BETA-D-GLUCOSIDE  1OAN  CRYSTAL STRUCTURE OF THE DENGUE 2 VIRUS ENVELOPE PROTEIN  1OK8  CRYSTAL STRUCTURE OF THE DENGUE 2 VIRUS ENVELOPE GLYCOPROTEIN IN THE POSTFUSION CONFORMATION      Ligand Chemical Component Hide Identifier Formula Name Interactions BMA Search  Download  C6 H12 O6 BETA-D-MANNOSE   Ligand Explorer BOG Search  Download  C14 H28 O6 B-OCTYLGLUCOSIDE   Ligand Explorer FUL Search  Download  C6 H12 O5 BETA-L-FUCOSE   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 4 Domains - data from SCOP   CATH Classification v3.4.0: 8 Domains - data from CATH   Pfam Classification: 2 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Modis, Y.,  Harrison, S.C. Deposition:   2003-07-22 Release:   2003-07-24 Last Modified (REVDAT):   2012-01-18 Previous versions:  1OAM     Revision History    Hide Mouse over text for details 2012-01-18 Citation 2012-01-18 Binding sites and description 2012-01-18 Non-polymer description 2012-01-18 Geometry validation 2012-01-18 Function and keywords 2012-01-18 Other 2012-01-18 Atom nomenclature 2012-01-18 Biological assembly 2012-01-18 Linkage     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.40 R-Value: 0.263 (obs.) R-Free: 0.294 Space Group: P 31 2 1 Unit Cell:   Length [Å] Angles [°] a = 81.60 α = 90.00  b = 81.60 β = 90.00  c = 287.41 γ = 120.00      Molecule of the Month Hide Dengue Virus