THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 COVALENTLY COMPLEXED WITH PYROPHOSPHATE FROM BRADYRHIZOBIUM JAPONICUM
1OCM

Entry 1OCM supersedes 1GRK

Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Amidase
    Structure Weight: 87535.92
    Molecule: MALONAMIDASE E2
    Polymer: 1 Type: protein Length: 412
    Chains: A, B
    Details: PYROPHOSPHATE COVALENTLY BONDED WITH RESIDUE 155 IN CHAIN A, B
    Organism: Bradyrhizobium japonicum
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  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Bradyrhizobium japonicum   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1O9N   CRYSTAL STRUCTURE OF THE K62A MUTANT OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM 
    1O9O   CRYSTAL STRUCTURE OF THE S131A MUTANT OF MALONAMIDASE E2 COMPLEXED WITH MALONAMATE FROM BRADYRHIZOBIUM JAPONICUM 
    1O9P   CRYSTAL STRUCTURE OF THE S131A MUTANT OF MALONAMIDASE E2 COMPLEXED WITH MALONATE FROM BRADYRHIZOBIUM JAPONICUM 
    1O9Q   CRYSTAL STRUCTURE OF THE S155C MUTANT OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM 
    1OBI   CRYSTAL STRUCTURE OF THE G130A MUTANT OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM 
    1OBJ   CRYSTAL STRUCTURE OF THE T150A MUTANT OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM 
    1OBK   CRYSTAL STRUCTURE OF THE R158Q MUTANT OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM 
    1OBL   CRYSTAL STRUCTURE OF THE S133A MUTANT OF MALONAMIDASE E2 COMPLEXED WITH MALONATE FROM BRADYRHIZOBIUM JAPONICUM 
    1OCH   CRYSTAL STRUCTURE OF THE S155C MUTANT OF MALONAMIDASE E2 
    1OCK   THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM 
    1OCL   THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 COMPLEXED WITH MALONATE FROM BRADYRHIZOBIUM JAPONICUM 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    POP
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    POP H2 O7 P2
    PYROPHOSPHATE 2-
    POP:1OCM
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Shin, S.,  Ha, N.-C.,  Lee, T.-H.,  Oh, B.-H.

    Deposition:   2003-02-08
    Release:   2003-02-25
    Last Modified (REVDAT):   2009-02-24

    Previous versions:  1GRK
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   1.90
    R-Value: 0.181 (obs.)
    R-Free: 0.222
    Space Group: P 21 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 103.26 α = 90.00 
    b = 94.43 β = 90.00 
    c = 74.85 γ = 90.00