1OCM

THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 COVALENTLY COMPLEXED WITH PYROPHOSPHATE FROM BRADYRHIZOBIUM JAPONICUM

Structural Biology Knowledgebase: 1OCM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 1OCM

Classification: AMIDASE

Total Structure Weight: 87536.01

Macromolecule Entities
Molecule Chains Length Organism Details
MALONAMIDASE E2 A, B 412 Bradyrhizobium japonicum Details: PYROPHOSPHATE COVALENTLY BONDED WITH RESIDUE 155 IN CHAIN A, B
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
POP
Query on POP

A, B PYROPHOSPHATE 2-
H2 O7 P2
XPPKVPWEQAFLFU-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.181
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 103.26 α = 90.00
b = 94.43 β = 90.00
c = 74.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-08
  • Released Date: 2003-02-25
  • Deposition author(s): Shin, S., Ha, N.-C., Lee, T.-H., Oh, B.-H.
  • Previous versions: 1GRK

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4