1O6K

STRUCTURE OF ACTIVATED FORM OF PKB KINASE DOMAIN S474D WITH GSK3 PEPTIDE AND AMP-PNP

Structural Biology Knowledgebase: 1O6K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1O6K

Classification: TRANSFERASE

Total Structure Weight: 40861.34

Macromolecule Entities
Molecule Chains Length Organism Details
RAC-BETA SERINE/THREONINE PROTEIN KINASE A 336 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: KINASE DOMAIN, RESIDUES 146-481
Mutation: S474D
Gene Name(s): AKT2 Gene View
GLYCOGEN SYNTHASE KINASE-3 BETA C 10 Homo sapiens EC#: 2.7.11.26 IUBMB
Fragment: PEPTIDE, RESIDUES 3-12
Gene Name(s): GSK3B Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.205
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.91 α = 90.00
b = 61.00 β = 90.00
c = 129.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-08
  • Released Date: 2002-11-19
  • Deposition author(s): Yang, J., Cron, P., Good, V.M., Thompson, V., Hemmings, B.A., Barford, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4