1O2Z

Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors

Structural Biology Knowledgebase: 1O2Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1O2Z

Classification: hydrolase

Total Structure Weight: 23836.94

Macromolecule Entities
Molecule Chains Length Organism Details
BETA-TRYPSIN A 223 Bos taurus EC#: 3.4.21.4 IUBMB

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
312
Query on 312

A 2-(5-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL- 2-YL}-2'-METHOXY-6-OXIDO-1,1'-BIPHENYL-3- YL)SUCCINATE
CRA_17312 (Synonym)
C25 H20 N4 O6
HVNXYZZCSQONQC-OAHLLOKOSA-L
Ligand Explorer
 
JSmol
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
312 Ki: 780 nM (100) BindingDB

Ki: 780 nM  BindingMOAD
Ki: 780 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.188
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 63.96 α = 90.00
b = 61.73 β = 90.00
c = 70.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-06
  • Released Date: 2003-09-02
  • Deposition author(s): Katz, B.A., Elrod, K., Verner, E., Mackman, R.L., Luong, C., Shrader, W.D., Sendzik, M., Spencer, J.R., Sprengeler, P.A., Kolesnikov, A., Tai, V.W., Hui, H.C., Breitenbucher, J.G., Allen, D., Janc, J.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4