1NKW

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Structural Biology Knowledgebase: 1NKW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.240

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1NKW

Classification: RIBOSOME

Total Structure Weight: 1388105.00


Macromolecule Entities
Molecule Chains Length Organism Details
50S ribosomal protein L2 A 275 Deinococcus radiodurans Gene Name(s): rplB DR_0314
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L3 B 211 Deinococcus radiodurans Gene Name(s): rplC DR_0311
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L4 C 205 Deinococcus radiodurans Gene Name(s): rplD DR_0312
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L5 D 180 Deinococcus radiodurans Gene Name(s): rplE DR_0323
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L6 E 212 Deinococcus radiodurans Gene Name(s): rplF DR_2111
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L9 F 146 Deinococcus radiodurans Gene Name(s): rplI DR_0102
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L11 G 144 Deinococcus radiodurans Gene Name(s): rplK DR_2046
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L13 H 174 Deinococcus radiodurans Gene Name(s): rplM DR_0174
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L14 I 134 Deinococcus radiodurans Gene Name(s): rplN DR_0321
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L15 J 156 Deinococcus radiodurans Gene Name(s): rplO DR_2115
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L16 K 142 Deinococcus radiodurans Gene Name(s): rplP DR_0318
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L17 L 116 Deinococcus radiodurans Gene Name(s): rplQ DR_2129
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L18 M 114 Deinococcus radiodurans Gene Name(s): rplR DR_2112
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L19 N 166 Deinococcus radiodurans Gene Name(s): rplS DR_0755
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L20 O 118 Deinococcus radiodurans Gene Name(s): rplT DR_2004
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L21 P 100 Deinococcus radiodurans Gene Name(s): rplU DR_0086
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L22 Q 134 Deinococcus radiodurans Gene Name(s): rplV DR_0316
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L23 R 95 Deinococcus radiodurans Gene Name(s): rplW DR_0313
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L24 S 115 Deinococcus radiodurans Gene Name(s): rplX DR_0322
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
general stress protein CTC T 253 Deinococcus radiodurans Gene Name(s): rplY ctc DR_0427
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L27 U 91 Deinococcus radiodurans Gene Name(s): rpmA DR_0085
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L29 W 67 Deinococcus radiodurans Gene Name(s): rpmC DR_0319
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L30 X 55 Deinococcus radiodurans Gene Name(s): rpmD DR_2114
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L31 Y 73 Deinococcus radiodurans Gene Name(s): rpmE DR_0825
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L32 Z 60 Deinococcus radiodurans Gene Name(s): rpmF DR_2366
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L33 1 82 Deinococcus radiodurans Gene Name(s): rpmG DR_2049
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L34 2 47 Deinococcus radiodurans Gene Name(s): rpmH DR_2152
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L35 3 64 Deinococcus radiodurans Gene Name(s): rpmI DR_2005
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L36 4 36 Deinococcus radiodurans Gene Name(s): rpmJ DR_2124
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
23S ribosomal RNA 0 2880 Deinococcus radiodurans
5S ribosomal RNA 9 124 Deinococcus radiodurans


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.240
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 170.00 α = 90.00
b = 410.00 β = 90.00
c = 697.00 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-01-05
  • Released Date: 2003-02-11
  • Deposition author(s): Harms, J.M., Schluenzen, F., Zarivach, R., Bashan, A., Gat, S., Agmon, I., Bartels, H., Franceschi, F., Yonath, A.
  • Previous versions: 1KC9 1KPJ 1LNR

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4