CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE DOI:10.2210/pdb1njz/pdb   NDB ID: PD0375

1NJZ   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase/dna Structure Weight: 74964.64 Molecule: DNA PRIMER STRAND Polymer: 1 Type: dna Length: 10 Chains: B Molecule: DNA TEMPLATE STRAND Polymer: 2 Type: dna Length: 16 Chains: C Molecule: DNA POLYMERASE I Polymer: 3 Type: protein Length: 580 Chains: A EC#: 2.7.7.7    Fragment: BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) Organism Geobacillus stearothermophilus Gene Names polA pol UniProtKB:   Protein Feature View | Search PDB | P52026         Source Hide Polymer: 1 Scientific Name: Synthetic construct   Taxonomy     Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Geobacillus stearothermophilus   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1NJW  GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE  1NJX  THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE  1NJY  THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE  1NK0  ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE  1NK4  GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE  1NK5  ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE  1NK6  CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE  1NK7  GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE  1NK8  A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.  1NK9  A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.  1NKB  A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP.  1NKC  A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP.  1NKE  A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.      Ligand Chemical Component Hide Identifier Formula Name Interactions MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer SUC Search  Download  C12 H22 O11 SUCROSE   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 2 Domains - data from SCOP   CATH Classification v3.4.0: 4 Domains - data from CATH   Pfam Classification: 1 Domain - data from Pfam       Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: PD0375     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Johnson, S.J.,  Beese, L.S. Deposition:   2003-01-02 Release:   2004-03-30 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.00 R-Value: 0.239 (obs.) R-Free: 0.245 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 87.34 α = 90.00  b = 93.47 β = 90.00  c = 105.80 γ = 90.00