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FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME
1MJ1
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 162275.09
    Molecule: Phe-tRNA
    Polymer: 1 Type: rna Length: 76
    Chains: C, D
    Details: TAKEN FROM PDB ENTRIES 1GIX, 1TRA
    Organism: Escherichia coli
    Molecule: sarcin-ricin loop of 23SrRNA
    Polymer: 2 Type: rna Length: 41
    Chains: Q
    Details: TAKEN FROM PDB ENTRY 1GIY
    Organism: Escherichia coli
    Molecule: helix 69 of 23S rRNA
    Polymer: 3 Type: rna Length: 27
    Chains: R
    Details: TAKEN FROM PDB ENTRY 1GIY
    Organism: Escherichia coli
    Molecule: Elongation Factor Tu
    Polymer: 4 Type: protein Length: 405
    Chains: A
    Details: TAKEN FROM PDB ENTRY 1B23
    Organism: Escherichia coli
    Gene Names: tuf tufA
    UniProtKB: Protein Feature View | Search PDB | Q01698  
    Molecule: S12 ribosomal protein
    Polymer: 5 Type: protein Length: 135
    Chains: O
    Details: TAKEN FROM PDB ENTRY 1GIX
    Organism: Escherichia coli
    Gene Names: rpsL TTHA1697
    UniProtKB: Protein Feature View | Search PDB | Q5SHN3  
    Molecule: S13 ribosomal protein
    Polymer: 6 Type: protein Length: 126
    Chains: P
    Details: TAKEN FROM PDB ENTRY 1GIX
    Organism: Escherichia coli
    Gene Names: rpsM rps13 TTHA1667
    UniProtKB: Protein Feature View | Search PDB | P80377  
    Molecule: L11 ribosomal protein
    Polymer: 7 Type: protein Length: 141
    Chains: L
    Details: TAKEN FROM PDB ENTRY 1GIY
    Organism: Escherichia coli
    Gene Names: rplK TM_0454
    UniProtKB: Protein Feature View | Search PDB | P29395  
     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 4
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 5
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 6
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 7
    Scientific Name: Escherichia coli   Taxonomy    
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    2MG
    Search 
    2MG C11 H16 N5 O8 P G rnaLinking
    H2U
    Search 
    H2U C9 H15 N2 O9 P U rnaLinking
    M2G
    Search 
    M2G C12 H18 N5 O8 P G rnaLinking
    OMC
    Search 
    OMC C10 H16 N3 O8 P C rnaLinking
    OMG
    Search 
    OMG C11 H16 N5 O8 P G rnaLinking
    YG
    Search 
    YG C21 H29 N6 O12 P G rnaLinking
    PSU
    Search 
    PSU C9 H13 N2 O9 P U rnaLinking
    5MC
    Search 
    5MC C10 H16 N3 O8 P C rnaLinking
    7MG
    Search 
    7MG C11 H18 N5 O8 P G rnaLinking
    5MU
    Search 
    5MU C10 H15 N2 O9 P U rnaLinking
    1MA
    Search 
    1MA C11 H16 N5 O7 P A rnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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