1MJ1

FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME

Structural Biology Knowledgebase: 1MJ1 SBKB.org


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 13.0 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)
  • Reconstruction Method: Single Particle

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1MJ1

Classification: RIBOSOME

Total Structure Weight: 162275.09


Macromolecule Entities
Molecule Chains Length Organism Details
Elongation Factor Tu A 405 Escherichia coli Details: TAKEN FROM PDB ENTRY 1B23
Gene Name(s): tuf tufA
S12 ribosomal protein O 135 Escherichia coli Details: TAKEN FROM PDB ENTRY 1GIX
Gene Name(s): rpsL TTHA1697
S13 ribosomal protein P 126 Escherichia coli Details: TAKEN FROM PDB ENTRY 1GIX
Gene Name(s): rpsM rps13 TTHA1667
L11 ribosomal protein L 141 Escherichia coli Details: TAKEN FROM PDB ENTRY 1GIY
Gene Name(s): rplK TM_0454
Macromolecule Entities
Molecule Chains Length Organism Details
Phe-tRNA C, D 76 Escherichia coli TAKEN FROM PDB ENTRIES 1GIX, 1TRA
sarcin-ricin loop of 23SrRNA Q 41 Escherichia coli TAKEN FROM PDB ENTRY 1GIY
helix 69 of 23S rRNA R 27 Escherichia coli TAKEN FROM PDB ENTRY 1GIY

Small Molecules
Modified Residues 11 Unique
ID Chains Type Formula 2D Diagram Parent
2MG
Query on 2MG
C, D RNA LINKING C11 H16 N5 O8 P G
H2U
Query on H2U
C, D RNA LINKING C9 H15 N2 O9 P U
M2G
Query on M2G
C, D RNA LINKING C12 H18 N5 O8 P G
OMC
Query on OMC
C, D RNA LINKING C10 H16 N3 O8 P C
OMG
Query on OMG
C, D RNA LINKING C11 H16 N5 O8 P G
YG
Query on YG
C, D RNA LINKING C21 H29 N6 O12 P G
PSU
Query on PSU
C, D RNA LINKING C9 H13 N2 O9 P U
5MC
Query on 5MC
C, D RNA LINKING C10 H16 N3 O8 P C
7MG
Query on 7MG
C, D RNA LINKING C11 H18 N5 O8 P G
5MU
Query on 5MU
C, D RNA LINKING C10 H15 N2 O9 P U
1MA
Query on 1MA
C, D RNA LINKING C11 H16 N5 O7 P A

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 13.0 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-26
  • Released Date: 2002-11-01
  • Deposition author(s): Stark, H., Rodnina, M.V., Wieden, H.-J., Zemlin, F., Wintermeyer, W., Vanheel, M.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4