1M6B

Structure of the HER3 (ERBB3) Extracellular Domain

Structural Biology Knowledgebase: 1M6B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.235

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1M6B

Classification: SIGNALING PROTEIN TRANSFERASE

Total Structure Weight: 140574.78

Macromolecule Entities
Molecule Chains Length Organism Details
Receptor protein-tyrosine kinase erbB-3 A, B 621 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: Extracellular Domain
Mutation: I61V
Gene Name(s): ERBB3 Gene View HER3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

B 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.235
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 236.26 α = 90.00
b = 49.62 β = 125.56
c = 190.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-15
  • Released Date: 2002-08-02
  • Deposition author(s): Leahy, D.J., Cho, H.-S.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4